Strain Fitness in Pseudomonas putida KT2440 around PP_0552

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0551 and PP_0552 are separated by 18 nucleotidesPP_0552 and PP_0553 are separated by 28 nucleotides PP_0551: PP_0551 - MORN domain protein, at 638,816 to 640,744 _0551 PP_0552: PP_0552 - 2,3-butanediol dehydrogenase, at 640,763 to 641,851 _0552 PP_0553: PP_0553 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 641,880 to 642,986 _0553 Position (kb) 640 641 642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 639.763 kb on - strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.831 kb on + strand, within PP_0551at 639.831 kb on + strand, within PP_0551at 639.832 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.993 kb on + strand, within PP_0551at 640.010 kb on + strand, within PP_0551at 640.149 kb on + strand, within PP_0551at 640.149 kb on + strand, within PP_0551at 640.149 kb on + strand, within PP_0551at 640.150 kb on - strand, within PP_0551at 640.176 kb on + strand, within PP_0551at 640.240 kb on + strand, within PP_0551at 640.240 kb on + strand, within PP_0551at 640.242 kb on + strand, within PP_0551at 640.243 kb on - strand, within PP_0551at 640.243 kb on - strand, within PP_0551at 640.309 kb on - strand, within PP_0551at 640.309 kb on - strand, within PP_0551at 640.433 kb on + strand, within PP_0551at 640.434 kb on - strand, within PP_0551at 640.434 kb on - strand, within PP_0551at 640.566 kb on + strandat 640.566 kb on + strandat 640.566 kb on + strandat 640.566 kb on + strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.579 kb on + strandat 640.580 kb on - strandat 640.580 kb on - strandat 640.647 kb on + strandat 640.648 kb on - strandat 640.654 kb on + strandat 640.655 kb on - strandat 640.935 kb on + strandat 640.936 kb on - strand, within PP_0552at 641.011 kb on + strand, within PP_0552at 641.069 kb on - strand, within PP_0552at 641.297 kb on + strand, within PP_0552at 641.297 kb on + strand, within PP_0552at 641.298 kb on - strand, within PP_0552at 641.298 kb on - strand, within PP_0552at 641.407 kb on - strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.494 kb on - strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.512 kb on - strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.515 kb on - strand, within PP_0552at 641.515 kb on - strand, within PP_0552at 641.522 kb on - strand, within PP_0552at 641.568 kb on + strand, within PP_0552at 641.666 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.778 kb on - strandat 641.778 kb on - strandat 641.794 kb on + strandat 641.881 kb on + strandat 641.881 kb on + strandat 641.882 kb on - strandat 641.882 kb on - strandat 641.970 kb on + strandat 641.971 kb on - strandat 642.262 kb on + strand, within PP_0553at 642.263 kb on - strand, within PP_0553at 642.634 kb on - strand, within PP_0553at 642.634 kb on - strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.712 kb on - strand, within PP_0553at 642.712 kb on - strand, within PP_0553

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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639,763 - PP_0551 0.49 -1.5
639,763 - PP_0551 0.49 +1.6
639,763 - PP_0551 0.49 +1.2
639,831 + PP_0551 0.53 +0.2
639,831 + PP_0551 0.53 -0.7
639,832 - PP_0551 0.53 +1.0
639,970 - PP_0551 0.60 +0.4
639,970 - PP_0551 0.60 -0.0
639,970 - PP_0551 0.60 -0.8
639,970 - PP_0551 0.60 +0.6
639,993 + PP_0551 0.61 +1.1
640,010 + PP_0551 0.62 -2.0
640,149 + PP_0551 0.69 -0.7
640,149 + PP_0551 0.69 -2.1
640,149 + PP_0551 0.69 +2.8
640,150 - PP_0551 0.69 +1.3
640,176 + PP_0551 0.71 -1.2
640,240 + PP_0551 0.74 +0.9
640,240 + PP_0551 0.74 -0.4
640,242 + PP_0551 0.74 +0.6
640,243 - PP_0551 0.74 -0.2
640,243 - PP_0551 0.74 +0.9
640,309 - PP_0551 0.77 +1.0
640,309 - PP_0551 0.77 +0.6
640,433 + PP_0551 0.84 +2.3
640,434 - PP_0551 0.84 +2.2
640,434 - PP_0551 0.84 +2.1
640,566 + +2.0
640,566 + +1.7
640,566 + +1.5
640,566 + -0.8
640,567 - +0.0
640,567 - -3.3
640,567 - -0.2
640,567 - -0.6
640,567 - -2.5
640,567 - -1.2
640,567 - +0.3
640,579 + +2.8
640,580 - -0.5
640,580 - +2.0
640,647 + +0.7
640,648 - +0.0
640,654 + -0.1
640,655 - +1.0
640,935 + +1.9
640,936 - PP_0552 0.16 +1.1
641,011 + PP_0552 0.23 +1.0
641,069 - PP_0552 0.28 -0.1
641,297 + PP_0552 0.49 +0.2
641,297 + PP_0552 0.49 -0.2
641,298 - PP_0552 0.49 +0.8
641,298 - PP_0552 0.49 +0.6
641,407 - PP_0552 0.59 -0.3
641,493 + PP_0552 0.67 +1.3
641,493 + PP_0552 0.67 -0.2
641,493 + PP_0552 0.67 -1.3
641,493 + PP_0552 0.67 +0.3
641,493 + PP_0552 0.67 -0.7
641,494 - PP_0552 0.67 +0.4
641,511 + PP_0552 0.69 +2.9
641,511 + PP_0552 0.69 -1.2
641,511 + PP_0552 0.69 -0.2
641,512 - PP_0552 0.69 -0.7
641,514 + PP_0552 0.69 -0.3
641,514 + PP_0552 0.69 +0.0
641,514 + PP_0552 0.69 -0.3
641,514 + PP_0552 0.69 +1.3
641,514 + PP_0552 0.69 -0.5
641,514 + PP_0552 0.69 +0.5
641,514 + PP_0552 0.69 -1.9
641,515 - PP_0552 0.69 -0.5
641,515 - PP_0552 0.69 +0.3
641,522 - PP_0552 0.70 -0.7
641,568 + PP_0552 0.74 -1.4
641,666 + PP_0552 0.83 +0.4
641,694 + PP_0552 0.85 -1.3
641,694 + PP_0552 0.85 +2.9
641,694 + PP_0552 0.85 +0.1
641,695 - PP_0552 0.86 +0.1
641,695 - PP_0552 0.86 -0.3
641,695 - PP_0552 0.86 -0.0
641,695 - PP_0552 0.86 -0.4
641,778 - -0.3
641,778 - -0.3
641,794 + +0.0
641,881 + +0.6
641,881 + -0.9
641,882 - -0.0
641,882 - +1.0
641,970 + -0.4
641,971 - -0.2
642,262 + PP_0553 0.35 -0.6
642,263 - PP_0553 0.35 +1.4
642,634 - PP_0553 0.68 -1.2
642,634 - PP_0553 0.68 +0.2
642,711 + PP_0553 0.75 -1.0
642,711 + PP_0553 0.75 +0.8
642,711 + PP_0553 0.75 +0.2
642,712 - PP_0553 0.75 -0.6
642,712 - PP_0553 0.75 -0.3

Or see this region's nucleotide sequence