Strain Fitness in Pseudomonas putida KT2440 around PP_0550

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0548 and PP_0549 overlap by 4 nucleotidesPP_0549 and PP_0550 are separated by 107 nucleotidesPP_0550 and PP_0551 are separated by 27 nucleotides PP_0548: PP_0548 - putative phenylacrylic acid decarboxylase, padA1, at 637,123 to 637,752 _0548 PP_0549: PP_0549 - putative Lipoprotein, at 637,749 to 638,036 _0549 PP_0550: PP_0550 - conserved protein of unknown function, at 638,144 to 638,788 _0550 PP_0551: PP_0551 - MORN domain protein, at 638,816 to 640,744 _0551 Position (kb) 638 639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 637.849 kb on - strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.873 kb on - strand, within PP_0549at 637.873 kb on - strand, within PP_0549at 637.908 kb on + strand, within PP_0549at 638.008 kb on + strandat 638.009 kb on - strandat 638.009 kb on - strandat 638.064 kb on + strandat 638.065 kb on - strandat 638.065 kb on - strandat 638.074 kb on + strandat 638.145 kb on + strandat 638.239 kb on + strand, within PP_0550at 638.295 kb on - strand, within PP_0550at 638.295 kb on - strand, within PP_0550at 638.432 kb on - strand, within PP_0550at 638.619 kb on - strand, within PP_0550at 638.677 kb on + strand, within PP_0550at 638.723 kb on + strand, within PP_0550at 638.724 kb on - strandat 638.784 kb on + strandat 638.784 kb on + strandat 638.784 kb on + strandat 638.784 kb on + strandat 638.785 kb on - strandat 638.785 kb on - strandat 638.785 kb on - strandat 638.806 kb on - strandat 639.069 kb on + strand, within PP_0551at 639.163 kb on + strand, within PP_0551at 639.163 kb on + strand, within PP_0551at 639.164 kb on - strand, within PP_0551at 639.165 kb on + strand, within PP_0551at 639.165 kb on + strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.177 kb on + strand, within PP_0551at 639.177 kb on + strand, within PP_0551at 639.178 kb on - strand, within PP_0551at 639.322 kb on - strand, within PP_0551at 639.486 kb on + strand, within PP_0551at 639.486 kb on + strand, within PP_0551at 639.487 kb on - strand, within PP_0551at 639.487 kb on - strand, within PP_0551at 639.487 kb on - strand, within PP_0551at 639.507 kb on - strand, within PP_0551at 639.507 kb on - strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.573 kb on - strand, within PP_0551at 639.573 kb on - strand, within PP_0551at 639.620 kb on + strand, within PP_0551at 639.620 kb on + strand, within PP_0551at 639.621 kb on - strand, within PP_0551at 639.621 kb on - strand, within PP_0551at 639.735 kb on + strand, within PP_0551at 639.762 kb on + strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.763 kb on - strand, within PP_0551

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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637,849 - PP_0549 0.35 -0.5
637,872 + PP_0549 0.43 +0.4
637,872 + PP_0549 0.43 -0.2
637,872 + PP_0549 0.43 +1.1
637,872 + PP_0549 0.43 -1.3
637,872 + PP_0549 0.43 +0.1
637,873 - PP_0549 0.43 -0.3
637,873 - PP_0549 0.43 -0.3
637,908 + PP_0549 0.55 -1.2
638,008 + +2.4
638,009 - -0.8
638,009 - +1.2
638,064 + +0.5
638,065 - +2.6
638,065 - +0.3
638,074 + -2.8
638,145 + -0.4
638,239 + PP_0550 0.15 -0.4
638,295 - PP_0550 0.23 -0.6
638,295 - PP_0550 0.23 -1.3
638,432 - PP_0550 0.45 -1.4
638,619 - PP_0550 0.74 -0.9
638,677 + PP_0550 0.83 -1.7
638,723 + PP_0550 0.90 -1.3
638,724 - -1.2
638,784 + +0.4
638,784 + -3.2
638,784 + +0.2
638,784 + +2.1
638,785 - +0.3
638,785 - -1.2
638,785 - +0.3
638,806 - +0.8
639,069 + PP_0551 0.13 +0.8
639,163 + PP_0551 0.18 -0.1
639,163 + PP_0551 0.18 +2.6
639,164 - PP_0551 0.18 +0.5
639,165 + PP_0551 0.18 +0.1
639,165 + PP_0551 0.18 +0.3
639,166 - PP_0551 0.18 -0.0
639,166 - PP_0551 0.18 -1.1
639,166 - PP_0551 0.18 +0.8
639,166 - PP_0551 0.18 +0.8
639,177 + PP_0551 0.19 -0.2
639,177 + PP_0551 0.19 -0.8
639,178 - PP_0551 0.19 +0.4
639,322 - PP_0551 0.26 +1.3
639,486 + PP_0551 0.35 +1.2
639,486 + PP_0551 0.35 -0.8
639,487 - PP_0551 0.35 +1.0
639,487 - PP_0551 0.35 +3.3
639,487 - PP_0551 0.35 +2.4
639,507 - PP_0551 0.36 +0.5
639,507 - PP_0551 0.36 +1.0
639,543 + PP_0551 0.38 +0.8
639,543 + PP_0551 0.38 +1.9
639,543 + PP_0551 0.38 +0.1
639,543 + PP_0551 0.38 +0.3
639,543 + PP_0551 0.38 -1.3
639,544 - PP_0551 0.38 +0.0
639,544 - PP_0551 0.38 +0.4
639,544 - PP_0551 0.38 +1.3
639,544 - PP_0551 0.38 +0.6
639,573 - PP_0551 0.39 +1.4
639,573 - PP_0551 0.39 +2.9
639,620 + PP_0551 0.42 +0.7
639,620 + PP_0551 0.42 +3.6
639,621 - PP_0551 0.42 +0.6
639,621 - PP_0551 0.42 +2.4
639,735 + PP_0551 0.48 -1.4
639,762 + PP_0551 0.49 +0.5
639,763 - PP_0551 0.49 -1.5
639,763 - PP_0551 0.49 +1.6
639,763 - PP_0551 0.49 +1.2

Or see this region's nucleotide sequence