Strain Fitness in Pseudomonas putida KT2440 around PP_0543

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0541 and PP_0542 are separated by 107 nucleotidesPP_0542 and PP_0543 are separated by 8 nucleotidesPP_0543 and PP_0544 are separated by 46 nucleotides PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868 _0541 PP_0542: PP_0542 - ethanolamine ammonia-lyase, beta-subunit, at 627,976 to 628,794 _0542 PP_0543: PP_0543 - ethanolamine ammonia-lyase, alpha-subunit, at 628,803 to 630,197 _0543 PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692 _0544 Position (kb) 628 629 630 631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 627.807 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.943 kb on + strandat 627.944 kb on - strandat 628.035 kb on + strandat 628.057 kb on + strandat 628.058 kb on - strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.130 kb on + strand, within PP_0542at 628.202 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.212 kb on - strand, within PP_0542at 628.545 kb on - strand, within PP_0542at 628.545 kb on - strand, within PP_0542at 628.777 kb on - strandat 628.804 kb on + strandat 628.804 kb on + strandat 628.805 kb on - strandat 628.981 kb on + strand, within PP_0543at 628.982 kb on - strand, within PP_0543at 628.982 kb on - strand, within PP_0543at 629.098 kb on + strand, within PP_0543at 629.098 kb on + strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.185 kb on + strand, within PP_0543at 629.185 kb on + strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.257 kb on + strand, within PP_0543at 629.258 kb on - strand, within PP_0543at 629.258 kb on - strand, within PP_0543at 629.338 kb on + strand, within PP_0543at 629.389 kb on + strand, within PP_0543at 629.389 kb on + strand, within PP_0543at 629.389 kb on + strand, within PP_0543at 629.390 kb on - strand, within PP_0543at 629.549 kb on - strand, within PP_0543at 629.648 kb on - strand, within PP_0543at 629.648 kb on - strand, within PP_0543at 630.197 kb on + strandat 630.323 kb on + strandat 630.324 kb on - strandat 630.324 kb on - strandat 630.335 kb on + strandat 630.336 kb on - strandat 630.336 kb on - strandat 630.336 kb on - strandat 630.343 kb on + strandat 630.344 kb on - strandat 630.348 kb on - strandat 630.353 kb on + strandat 630.353 kb on + strandat 630.353 kb on + strandat 630.353 kb on + strandat 630.354 kb on - strandat 630.467 kb on + strand, within PP_0544at 630.530 kb on + strand, within PP_0544at 630.530 kb on + strand, within PP_0544at 630.530 kb on + strand, within PP_0544at 630.531 kb on - strand, within PP_0544at 630.531 kb on - strand, within PP_0544at 630.531 kb on - strand, within PP_0544at 630.714 kb on - strand, within PP_0544at 630.714 kb on - strand, within PP_0544at 630.714 kb on - strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.719 kb on + strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strandat 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.720 kb on - strand, within PP_0544at 630.800 kb on + strand, within PP_0544at 630.801 kb on - strand, within PP_0544at 631.013 kb on + strand, within PP_0544at 631.130 kb on - strand, within PP_0544

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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627,807 + PP_0541 0.86 +1.0
627,807 + PP_0541 0.86 +0.8
627,943 + +1.3
627,944 - +0.7
628,035 + +0.3
628,057 + +1.2
628,058 - PP_0542 0.10 +0.7
628,103 + PP_0542 0.16 +0.1
628,103 + PP_0542 0.16 -2.1
628,104 - PP_0542 0.16 +0.5
628,104 - PP_0542 0.16 +0.4
628,130 + PP_0542 0.19 +0.7
628,202 + PP_0542 0.28 -1.4
628,211 + PP_0542 0.29 -1.1
628,211 + PP_0542 0.29 -1.3
628,211 + PP_0542 0.29 +0.5
628,212 - PP_0542 0.29 +1.6
628,545 - PP_0542 0.69 +0.5
628,545 - PP_0542 0.69 -0.2
628,777 - +1.9
628,804 + +0.2
628,804 + -0.7
628,805 - +1.0
628,981 + PP_0543 0.13 -0.6
628,982 - PP_0543 0.13 +0.7
628,982 - PP_0543 0.13 +0.8
629,098 + PP_0543 0.21 +0.5
629,098 + PP_0543 0.21 -1.5
629,099 - PP_0543 0.21 +1.5
629,099 - PP_0543 0.21 +0.3
629,099 - PP_0543 0.21 +0.8
629,099 - PP_0543 0.21 -1.8
629,185 + PP_0543 0.27 +2.6
629,185 + PP_0543 0.27 +0.1
629,186 - PP_0543 0.27 +0.6
629,186 - PP_0543 0.27 +3.3
629,186 - PP_0543 0.27 -0.9
629,186 - PP_0543 0.27 +1.6
629,186 - PP_0543 0.27 +0.0
629,186 - PP_0543 0.27 +1.1
629,186 - PP_0543 0.27 +2.2
629,186 - PP_0543 0.27 -0.8
629,257 + PP_0543 0.33 +1.3
629,258 - PP_0543 0.33 +1.0
629,258 - PP_0543 0.33 +1.4
629,338 + PP_0543 0.38 +0.1
629,389 + PP_0543 0.42 -1.0
629,389 + PP_0543 0.42 +0.2
629,389 + PP_0543 0.42 +1.7
629,390 - PP_0543 0.42 +0.5
629,549 - PP_0543 0.53 +1.3
629,648 - PP_0543 0.61 +2.4
629,648 - PP_0543 0.61 -1.0
630,197 + +0.3
630,323 + +0.6
630,324 - -0.1
630,324 - +2.4
630,335 + +0.8
630,336 - +1.0
630,336 - +2.7
630,336 - +0.8
630,343 + -1.0
630,344 - +0.3
630,348 - -0.4
630,353 + -0.9
630,353 + +1.5
630,353 + +1.9
630,353 + +0.5
630,354 - -0.2
630,467 + PP_0544 0.15 -0.7
630,530 + PP_0544 0.20 -1.5
630,530 + PP_0544 0.20 -0.7
630,530 + PP_0544 0.20 -0.2
630,531 - PP_0544 0.20 -1.0
630,531 - PP_0544 0.20 -0.6
630,531 - PP_0544 0.20 -0.6
630,714 - PP_0544 0.32 +0.8
630,714 - PP_0544 0.32 -1.4
630,714 - PP_0544 0.32 +1.4
630,719 + PP_0544 0.33 +0.5
630,719 + PP_0544 0.33 +0.7
630,719 + PP_0544 0.33 -0.5
630,719 + PP_0544 0.33 +2.3
630,719 + PP_0544 0.33 +0.5
630,719 + PP_0544 0.33 +0.4
630,719 + PP_0544 0.33 -0.1
630,719 + PP_0544 0.33 -0.9
630,719 + PP_0544 0.33 -0.3
630,719 + PP_0544 0.33 +0.6
630,719 + PP_0544 0.33 -2.0
630,719 + PP_0544 0.33 +0.3
630,720 - PP_0544 0.33 -0.5
630,720 - PP_0544 0.33 -0.7
630,720 - PP_0544 0.33 +2.4
630,720 - PP_0544 0.33 -1.3
630,720 - PP_0544 0.33 -0.6
630,720 - PP_0544 0.33 +0.6
630,720 - PP_0544 0.33 +1.2
630,720 - PP_0544 0.33 -0.2
630,720 - PP_0544 0.33 -0.8
630,720 - PP_0544 0.33 -1.0
630,720 - +0.6
630,720 - PP_0544 0.33 +1.2
630,720 - PP_0544 0.33 +1.3
630,720 - PP_0544 0.33 +0.3
630,800 + PP_0544 0.38 -0.1
630,801 - PP_0544 0.38 +1.3
631,013 + PP_0544 0.53 -0.4
631,130 - PP_0544 0.61 -0.1

Or see this region's nucleotide sequence