Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0486 and PP_0487 are separated by 146 nucleotides PP_0487 and PP_0488 are separated by 21 nucleotides PP_0488 and PP_0489 are separated by 147 nucleotides
PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089
_0486
PP_0487: PP_0487 - conserved membrane protein of unknown function, at 573,236 to 574,033
_0487
PP_0488: PP_0488 - putative NADP-dependent dehydrogenase HI_1430, at 574,055 to 574,816
_0488
PP_0489: PP_0489 - formate dehydrogenase-O major subunit, at 574,964 to 578,032
_0489
Position (kb) 573
574
575 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 572.454 kb on + strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.557 kb on - strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.595 kb on + strand, within PP_0486 at 572.647 kb on + strand, within PP_0486 at 572.648 kb on - strand, within PP_0486 at 572.648 kb on - strand, within PP_0486 at 572.800 kb on - strand, within PP_0486 at 572.878 kb on + strand, within PP_0486 at 572.905 kb on - strand, within PP_0486 at 573.031 kb on + strand at 573.031 kb on + strand at 573.032 kb on - strand at 573.084 kb on + strand at 573.085 kb on - strand at 573.107 kb on + strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.116 kb on + strand at 573.117 kb on - strand at 573.140 kb on + strand at 573.145 kb on + strand at 573.173 kb on + strand at 573.223 kb on - strand at 573.223 kb on - strand at 573.223 kb on - strand at 573.248 kb on - strand at 573.267 kb on - strand at 573.267 kb on - strand at 573.267 kb on - strand at 573.300 kb on + strand at 573.300 kb on + strand at 573.301 kb on - strand at 573.301 kb on - strand at 573.301 kb on - strand at 573.495 kb on + strand, within PP_0487 at 573.495 kb on + strand, within PP_0487 at 573.496 kb on - strand, within PP_0487 at 573.526 kb on - strand, within PP_0487 at 573.533 kb on + strand, within PP_0487 at 573.534 kb on - strand, within PP_0487 at 573.610 kb on + strand, within PP_0487 at 573.716 kb on + strand, within PP_0487 at 573.716 kb on + strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.770 kb on + strand, within PP_0487 at 573.770 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.879 kb on - strand, within PP_0487 at 574.043 kb on - strand at 574.043 kb on - strand at 574.043 kb on - strand at 574.071 kb on + strand at 574.195 kb on - strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.473 kb on - strand, within PP_0488 at 574.473 kb on - strand, within PP_0488 at 574.496 kb on + strand, within PP_0488 at 574.496 kb on + strand, within PP_0488 at 574.497 kb on - strand, within PP_0488 at 574.658 kb on + strand, within PP_0488 at 574.659 kb on - strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.738 kb on + strand, within PP_0488 at 574.739 kb on - strand, within PP_0488 at 574.744 kb on + strand at 574.744 kb on + strand at 574.744 kb on + strand at 574.745 kb on - strand at 574.745 kb on - strand at 574.745 kb on - strand at 574.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 572,454 + PP_0486 0.55 -1.7 572,455 - PP_0486 0.55 +0.9 572,455 - PP_0486 0.55 -0.4 572,455 - PP_0486 0.55 -0.4 572,556 + PP_0486 0.63 -0.8 572,556 + PP_0486 0.63 -0.7 572,556 + PP_0486 0.63 -0.1 572,557 - PP_0486 0.63 +0.4 572,559 + PP_0486 0.63 +0.9 572,559 + PP_0486 0.63 +1.1 572,560 - PP_0486 0.63 -2.7 572,560 - PP_0486 0.63 -0.5 572,595 + PP_0486 0.65 -0.3 572,647 + PP_0486 0.69 -0.9 572,648 - PP_0486 0.69 +0.6 572,648 - PP_0486 0.69 -1.2 572,800 - PP_0486 0.80 -0.2 572,878 + PP_0486 0.85 +1.2 572,905 - PP_0486 0.87 +1.3 573,031 + -2.1 573,031 + -0.6 573,032 - -0.3 573,084 + +1.1 573,085 - +1.0 573,107 + -1.0 573,108 - -0.6 573,108 - +0.6 573,108 - +0.4 573,108 - -1.6 573,116 + +1.3 573,117 - +0.7 573,140 + +1.2 573,145 + -0.0 573,173 + +0.5 573,223 - -1.6 573,223 - -0.1 573,223 - +0.2 573,248 - +0.4 573,267 - -1.1 573,267 - +0.3 573,267 - -0.4 573,300 + +1.3 573,300 + -2.1 573,301 - -0.1 573,301 - -1.4 573,301 - +0.2 573,495 + PP_0487 0.32 -0.3 573,495 + PP_0487 0.32 -1.5 573,496 - PP_0487 0.33 -0.4 573,526 - PP_0487 0.36 -0.9 573,533 + PP_0487 0.37 -1.2 573,534 - PP_0487 0.37 +0.3 573,610 + PP_0487 0.47 +0.4 573,716 + PP_0487 0.60 -3.9 573,716 + PP_0487 0.60 +0.5 573,717 - PP_0487 0.60 -1.8 573,717 - PP_0487 0.60 -0.7 573,717 - PP_0487 0.60 -0.8 573,717 - PP_0487 0.60 -0.5 573,770 + PP_0487 0.67 +1.4 573,770 + PP_0487 0.67 -2.0 573,878 + PP_0487 0.80 -0.3 573,878 + PP_0487 0.80 -1.3 573,878 + PP_0487 0.80 +0.7 573,879 - PP_0487 0.81 -0.8 574,043 - -0.2 574,043 - +1.6 574,043 - +0.2 574,071 + +1.2 574,195 - PP_0488 0.18 -0.5 574,472 + PP_0488 0.55 -0.2 574,472 + PP_0488 0.55 -0.5 574,472 + PP_0488 0.55 +0.9 574,472 + PP_0488 0.55 +0.4 574,472 + PP_0488 0.55 -0.7 574,472 + PP_0488 0.55 +0.4 574,473 - PP_0488 0.55 +0.8 574,473 - PP_0488 0.55 -0.1 574,496 + PP_0488 0.58 -0.7 574,496 + PP_0488 0.58 -0.1 574,497 - PP_0488 0.58 -0.7 574,658 + PP_0488 0.79 +1.6 574,659 - PP_0488 0.79 +0.1 574,668 + PP_0488 0.80 +0.8 574,668 + PP_0488 0.80 -1.2 574,668 + PP_0488 0.80 -0.6 574,668 + PP_0488 0.80 +0.6 574,668 + PP_0488 0.80 -1.3 574,669 - PP_0488 0.81 -0.7 574,669 - PP_0488 0.81 +2.6 574,669 - PP_0488 0.81 -0.9 574,669 - PP_0488 0.81 +0.2 574,738 + PP_0488 0.90 +1.2 574,739 - PP_0488 0.90 +0.9 574,744 + +0.6 574,744 + -0.4 574,744 + +0.9 574,745 - -0.2 574,745 - +0.0 574,745 - -0.7 574,866 + +1.3
Or see this region's nucleotide sequence