Strain Fitness in Pseudomonas putida KT2440 around PP_0371

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0370 and PP_0371 are separated by 340 nucleotidesPP_0371 and PP_0372 are separated by 210 nucleotides PP_0370: PP_0370 - Acyl-CoA dehydrogenase family protein, at 448,830 to 450,608 _0370 PP_0371: PP_0371 - Transcriptional regulator, LysR family, at 450,949 to 451,872 _0371 PP_0372: PP_0372 - Acetylornithine aminotransferase 2, at 452,083 to 453,363 _0372 Position (kb) 450 451 452Strain fitness (log2 ratio) -1 0 1 2 3at 449.958 kb on + strand, within PP_0370at 449.959 kb on - strand, within PP_0370at 449.959 kb on - strand, within PP_0370at 450.076 kb on + strand, within PP_0370at 450.076 kb on + strand, within PP_0370at 450.093 kb on + strand, within PP_0370at 450.094 kb on - strand, within PP_0370at 450.094 kb on - strand, within PP_0370at 450.094 kb on - strand, within PP_0370at 450.150 kb on + strand, within PP_0370at 450.150 kb on + strand, within PP_0370at 450.151 kb on - strand, within PP_0370at 450.151 kb on - strand, within PP_0370at 450.151 kb on - strand, within PP_0370at 450.158 kb on + strand, within PP_0370at 450.158 kb on + strand, within PP_0370at 450.195 kb on - strand, within PP_0370at 450.219 kb on + strand, within PP_0370at 450.219 kb on + strand, within PP_0370at 450.220 kb on - strand, within PP_0370at 450.220 kb on - strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.340 kb on + strand, within PP_0370at 450.340 kb on + strand, within PP_0370at 450.340 kb on + strand, within PP_0370at 450.394 kb on - strand, within PP_0370at 450.411 kb on + strand, within PP_0370at 450.412 kb on - strand, within PP_0370at 450.420 kb on + strand, within PP_0370at 450.421 kb on - strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.483 kb on + strandat 450.513 kb on + strandat 450.513 kb on + strandat 450.513 kb on + strandat 450.583 kb on - strandat 450.664 kb on + strandat 450.665 kb on - strandat 450.671 kb on + strandat 450.672 kb on - strandat 450.682 kb on - strandat 450.708 kb on + strandat 450.708 kb on + strandat 450.708 kb on + strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.732 kb on - strandat 450.744 kb on - strandat 451.060 kb on + strand, within PP_0371at 451.060 kb on + strand, within PP_0371at 451.203 kb on + strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.392 kb on - strand, within PP_0371at 451.392 kb on - strand, within PP_0371at 451.433 kb on + strand, within PP_0371at 451.434 kb on - strand, within PP_0371at 451.583 kb on - strand, within PP_0371at 451.583 kb on - strand, within PP_0371at 451.679 kb on + strand, within PP_0371at 451.679 kb on + strand, within PP_0371at 451.679 kb on + strand, within PP_0371at 451.680 kb on - strand, within PP_0371at 451.680 kb on - strand, within PP_0371at 451.819 kb on + strandat 451.835 kb on + strandat 451.836 kb on - strandat 451.937 kb on - strandat 451.945 kb on - strandat 451.958 kb on - strandat 452.216 kb on + strand, within PP_0372at 452.217 kb on - strand, within PP_0372at 452.266 kb on + strand, within PP_0372at 452.266 kb on + strand, within PP_0372at 452.266 kb on + strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.443 kb on + strand, within PP_0372at 452.444 kb on - strand, within PP_0372at 452.451 kb on + strand, within PP_0372at 452.452 kb on - strand, within PP_0372at 452.497 kb on - strand, within PP_0372at 452.538 kb on + strand, within PP_0372at 452.538 kb on + strand, within PP_0372at 452.539 kb on - strand, within PP_0372at 452.714 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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449,958 + PP_0370 0.63 -0.4
449,959 - PP_0370 0.63 -0.9
449,959 - PP_0370 0.63 +0.6
450,076 + PP_0370 0.70 -0.5
450,076 + PP_0370 0.70 +0.6
450,093 + PP_0370 0.71 +0.8
450,094 - PP_0370 0.71 +0.3
450,094 - PP_0370 0.71 +0.9
450,094 - PP_0370 0.71 +0.6
450,150 + PP_0370 0.74 -1.3
450,150 + PP_0370 0.74 +1.0
450,151 - PP_0370 0.74 +0.8
450,151 - PP_0370 0.74 +0.3
450,151 - PP_0370 0.74 -0.2
450,158 + PP_0370 0.75 +0.3
450,158 + PP_0370 0.75 -0.2
450,195 - PP_0370 0.77 -0.7
450,219 + PP_0370 0.78 +0.2
450,219 + PP_0370 0.78 +0.2
450,220 - PP_0370 0.78 -0.8
450,220 - PP_0370 0.78 +0.3
450,222 + PP_0370 0.78 +1.6
450,222 + PP_0370 0.78 -0.4
450,222 + PP_0370 0.78 +0.5
450,222 + PP_0370 0.78 -0.3
450,223 - PP_0370 0.78 -0.9
450,223 - PP_0370 0.78 -1.3
450,223 - PP_0370 0.78 -0.4
450,223 - PP_0370 0.78 +0.7
450,340 + PP_0370 0.85 -0.6
450,340 + PP_0370 0.85 +0.4
450,340 + PP_0370 0.85 +2.5
450,394 - PP_0370 0.88 +1.4
450,411 + PP_0370 0.89 +1.0
450,412 - PP_0370 0.89 -0.9
450,420 + PP_0370 0.89 +0.3
450,421 - PP_0370 0.89 +1.4
450,426 + PP_0370 0.90 +2.8
450,426 + PP_0370 0.90 +1.1
450,426 + PP_0370 0.90 +0.3
450,426 + PP_0370 0.90 +0.9
450,426 + PP_0370 0.90 +1.2
450,426 + PP_0370 0.90 +0.3
450,427 - PP_0370 0.90 +0.6
450,427 - PP_0370 0.90 -1.5
450,427 - PP_0370 0.90 -0.7
450,427 - PP_0370 0.90 +0.6
450,483 + -0.2
450,513 + -0.1
450,513 + -0.2
450,513 + -0.2
450,583 - -1.6
450,664 + -1.6
450,665 - +0.6
450,671 + +0.5
450,672 - +0.2
450,682 - +0.2
450,708 + +0.9
450,708 + +0.9
450,708 + -1.7
450,709 - +1.0
450,709 - -0.2
450,709 - +0.4
450,709 - -0.3
450,709 - +1.2
450,709 - +0.9
450,709 - -0.1
450,709 - -0.9
450,732 - +0.9
450,744 - +0.4
451,060 + PP_0371 0.12 +0.8
451,060 + PP_0371 0.12 -0.3
451,203 + PP_0371 0.27 +0.5
451,204 - PP_0371 0.28 -0.1
451,204 - PP_0371 0.28 +0.6
451,204 - PP_0371 0.28 +1.8
451,204 - PP_0371 0.28 +0.2
451,392 - PP_0371 0.48 +2.2
451,392 - PP_0371 0.48 +1.7
451,433 + PP_0371 0.52 +0.3
451,434 - PP_0371 0.52 -0.0
451,583 - PP_0371 0.69 +2.9
451,583 - PP_0371 0.69 +0.3
451,679 + PP_0371 0.79 -1.7
451,679 + PP_0371 0.79 +2.4
451,679 + PP_0371 0.79 -0.1
451,680 - PP_0371 0.79 +0.5
451,680 - PP_0371 0.79 -0.7
451,819 + +2.3
451,835 + -0.1
451,836 - -0.3
451,937 - +0.2
451,945 - -0.4
451,958 - +1.1
452,216 + PP_0372 0.10 -0.1
452,217 - PP_0372 0.10 -1.1
452,266 + PP_0372 0.14 +0.7
452,266 + PP_0372 0.14 +0.6
452,266 + PP_0372 0.14 -1.0
452,267 - PP_0372 0.14 +0.9
452,267 - PP_0372 0.14 +1.5
452,267 - PP_0372 0.14 +0.0
452,267 - PP_0372 0.14 +0.1
452,443 + PP_0372 0.28 -0.7
452,444 - PP_0372 0.28 +0.9
452,451 + PP_0372 0.29 +0.9
452,452 - PP_0372 0.29 +0.6
452,497 - PP_0372 0.32 +1.4
452,538 + PP_0372 0.36 +0.7
452,538 + PP_0372 0.36 -0.4
452,539 - PP_0372 0.36 -0.2
452,714 + PP_0372 0.49 +0.3
452,860 + PP_0372 0.61 -0.1
452,860 + PP_0372 0.61 -0.3

Or see this region's nucleotide sequence