Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0349 and PP_0350 are separated by 56 nucleotides PP_0350 and PP_0351 are separated by 251 nucleotides
PP_0349: PP_0349 - putative Membrane protein, at 424,197 to 425,309
_0349
PP_0350: PP_0350 - Outer membrane ferrichrome-iron receptor, at 425,366 to 427,798
_0350
PP_0351: PP_0351 - putative Transmembrane sensor protein, at 428,050 to 429,006
_0351
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 424.416 kb on + strand, within PP_0349 at 424.417 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.674 kb on + strand, within PP_0349 at 424.774 kb on - strand, within PP_0349 at 424.810 kb on + strand, within PP_0349 at 424.810 kb on + strand, within PP_0349 at 424.811 kb on - strand, within PP_0349 at 424.848 kb on + strand, within PP_0349 at 424.848 kb on + strand, within PP_0349 at 424.849 kb on - strand, within PP_0349 at 424.849 kb on - strand, within PP_0349 at 425.179 kb on - strand, within PP_0349 at 425.207 kb on + strand at 425.208 kb on - strand at 425.208 kb on - strand at 425.208 kb on - strand at 425.249 kb on + strand at 425.249 kb on + strand at 425.250 kb on - strand at 425.376 kb on + strand at 425.376 kb on + strand at 425.376 kb on + strand at 425.377 kb on - strand at 425.377 kb on - strand at 425.377 kb on - strand at 425.377 kb on - strand at 425.412 kb on + strand at 425.412 kb on + strand at 425.412 kb on + strand at 425.415 kb on + strand at 425.416 kb on - strand at 425.416 kb on - strand at 425.416 kb on - strand at 425.421 kb on + strand at 425.421 kb on + strand at 425.421 kb on + strand at 425.422 kb on - strand at 425.422 kb on - strand at 425.422 kb on - strand at 425.422 kb on - strand at 425.424 kb on + strand at 425.424 kb on + strand at 425.424 kb on + strand at 425.424 kb on + strand at 425.425 kb on - strand at 425.425 kb on - strand at 425.438 kb on - strand at 425.438 kb on - strand at 425.438 kb on - strand at 425.445 kb on + strand at 425.446 kb on - strand at 425.446 kb on - strand at 425.523 kb on + strand at 425.550 kb on + strand at 425.571 kb on + strand at 425.572 kb on - strand at 425.572 kb on - strand at 425.575 kb on + strand at 425.576 kb on - strand at 425.576 kb on - strand at 425.576 kb on - strand at 425.576 kb on - strand at 425.576 kb on - strand at 425.596 kb on + strand at 425.596 kb on + strand at 425.596 kb on + strand at 425.597 kb on - strand at 425.597 kb on - strand at 425.605 kb on + strand at 425.661 kb on + strand, within PP_0350 at 425.661 kb on + strand, within PP_0350 at 425.661 kb on + strand, within PP_0350 at 425.662 kb on - strand, within PP_0350 at 425.754 kb on + strand, within PP_0350 at 425.941 kb on - strand, within PP_0350 at 426.037 kb on - strand, within PP_0350 at 426.073 kb on - strand, within PP_0350 at 426.115 kb on + strand, within PP_0350 at 426.197 kb on - strand, within PP_0350 at 426.197 kb on - strand, within PP_0350 at 426.222 kb on + strand, within PP_0350 at 426.222 kb on + strand, within PP_0350 at 426.222 kb on + strand, within PP_0350 at 426.223 kb on - strand, within PP_0350 at 426.223 kb on - strand, within PP_0350 at 426.223 kb on - strand, within PP_0350 at 426.252 kb on + strand, within PP_0350 at 426.258 kb on + strand, within PP_0350 at 426.354 kb on + strand, within PP_0350 at 426.354 kb on + strand, within PP_0350 at 426.354 kb on + strand, within PP_0350 at 426.354 kb on + strand, within PP_0350 at 426.354 kb on + strand, within PP_0350 at 426.531 kb on + strand, within PP_0350 at 426.531 kb on + strand, within PP_0350 at 426.532 kb on - strand, within PP_0350 at 426.532 kb on - strand, within PP_0350 at 426.532 kb on - strand, within PP_0350 at 426.577 kb on - strand, within PP_0350 at 426.642 kb on + strand, within PP_0350 at 426.642 kb on + strand, within PP_0350 at 426.643 kb on - strand, within PP_0350 at 426.645 kb on + strand, within PP_0350 at 426.646 kb on - strand at 426.658 kb on - strand, within PP_0350 at 426.844 kb on - strand, within PP_0350 at 426.889 kb on + strand, within PP_0350 at 426.908 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.135 kb on - strand, within PP_0350 at 427.213 kb on + strand, within PP_0350 at 427.249 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.252 kb on - strand, within PP_0350 at 427.252 kb on - strand, within PP_0350 at 427.383 kb on + strand, within PP_0350 at 427.383 kb on + strand, within PP_0350 at 427.384 kb on - strand, within PP_0350 at 427.482 kb on + strand, within PP_0350 at 427.482 kb on + strand, within PP_0350 at 427.482 kb on + strand, within PP_0350 at 427.483 kb on - strand, within PP_0350 at 427.558 kb on - strand at 427.558 kb on - strand at 427.680 kb on + strand at 427.680 kb on + strand at 427.681 kb on - strand at 427.777 kb on + strand at 427.777 kb on + strand at 427.777 kb on + strand at 427.778 kb on - strand at 427.778 kb on - strand at 427.973 kb on + strand at 427.973 kb on + strand at 427.996 kb on - strand at 428.051 kb on + strand at 428.051 kb on + strand at 428.082 kb on + strand at 428.082 kb on + strand at 428.083 kb on - strand at 428.083 kb on - strand at 428.248 kb on + strand, within PP_0351 at 428.248 kb on + strand, within PP_0351 at 428.248 kb on + strand, within PP_0351 at 428.249 kb on - strand, within PP_0351 at 428.249 kb on - strand, within PP_0351 at 428.249 kb on - strand, within PP_0351 at 428.425 kb on - strand, within PP_0351 at 428.492 kb on - strand, within PP_0351 at 428.577 kb on - strand, within PP_0351 at 428.645 kb on - strand, within PP_0351 at 428.645 kb on - strand, within PP_0351 at 428.645 kb on - strand, within PP_0351 at 428.682 kb on - strand, within PP_0351 at 428.682 kb on - strand, within PP_0351
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 424,416 + PP_0349 0.20 +0.9 424,417 - PP_0349 0.20 +1.5 424,472 - PP_0349 0.25 -1.4 424,472 - PP_0349 0.25 +1.0 424,472 - PP_0349 0.25 -1.3 424,674 + PP_0349 0.43 -0.2 424,774 - PP_0349 0.52 +0.5 424,810 + PP_0349 0.55 +0.5 424,810 + PP_0349 0.55 -0.4 424,811 - PP_0349 0.55 +0.0 424,848 + PP_0349 0.58 -1.5 424,848 + PP_0349 0.58 -0.9 424,849 - PP_0349 0.59 +0.1 424,849 - PP_0349 0.59 -0.3 425,179 - PP_0349 0.88 -0.0 425,207 + +2.1 425,208 - +0.3 425,208 - -0.3 425,208 - -0.1 425,249 + -1.3 425,249 + +0.7 425,250 - -1.7 425,376 + -0.1 425,376 + -0.6 425,376 + -1.0 425,377 - -0.2 425,377 - -0.6 425,377 - +0.2 425,377 - -1.1 425,412 + -2.1 425,412 + +0.1 425,412 + -0.1 425,415 + -0.7 425,416 - -0.7 425,416 - -0.4 425,416 - -1.7 425,421 + +0.2 425,421 + +3.1 425,421 + +0.2 425,422 - -0.1 425,422 - -0.5 425,422 - -0.2 425,422 - -0.7 425,424 + +0.9 425,424 + -3.0 425,424 + +0.4 425,424 + -0.3 425,425 - -0.0 425,425 - +0.4 425,438 - -0.2 425,438 - +1.0 425,438 - +2.8 425,445 + -0.3 425,446 - -0.1 425,446 - -1.0 425,523 + +0.2 425,550 + +1.7 425,571 + +0.0 425,572 - -1.5 425,572 - -0.1 425,575 + -2.5 425,576 - +0.5 425,576 - +0.4 425,576 - +1.0 425,576 - +0.0 425,576 - -1.3 425,596 + -0.7 425,596 + +4.0 425,596 + -0.1 425,597 - +1.6 425,597 - -0.8 425,605 + -0.3 425,661 + PP_0350 0.12 -0.2 425,661 + PP_0350 0.12 +0.2 425,661 + PP_0350 0.12 -0.6 425,662 - PP_0350 0.12 -1.9 425,754 + PP_0350 0.16 -2.1 425,941 - PP_0350 0.24 -0.8 426,037 - PP_0350 0.28 -0.8 426,073 - PP_0350 0.29 +1.1 426,115 + PP_0350 0.31 +0.3 426,197 - PP_0350 0.34 +0.2 426,197 - PP_0350 0.34 +0.8 426,222 + PP_0350 0.35 -0.0 426,222 + PP_0350 0.35 -0.1 426,222 + PP_0350 0.35 -0.5 426,223 - PP_0350 0.35 +1.4 426,223 - PP_0350 0.35 +0.7 426,223 - PP_0350 0.35 +0.1 426,252 + PP_0350 0.36 -2.9 426,258 + PP_0350 0.37 +0.6 426,354 + PP_0350 0.41 -0.5 426,354 + PP_0350 0.41 +0.3 426,354 + PP_0350 0.41 +0.6 426,354 + PP_0350 0.41 -0.7 426,354 + PP_0350 0.41 +1.8 426,531 + PP_0350 0.48 +2.3 426,531 + PP_0350 0.48 -0.3 426,532 - PP_0350 0.48 -1.4 426,532 - PP_0350 0.48 -1.3 426,532 - PP_0350 0.48 -0.2 426,577 - PP_0350 0.50 -2.9 426,642 + PP_0350 0.52 +0.6 426,642 + PP_0350 0.52 -1.3 426,643 - PP_0350 0.52 -0.3 426,645 + PP_0350 0.53 -0.0 426,646 - +0.8 426,658 - PP_0350 0.53 +0.6 426,844 - PP_0350 0.61 +0.6 426,889 + PP_0350 0.63 +1.1 426,908 + PP_0350 0.63 +0.7 427,134 + PP_0350 0.73 +0.6 427,134 + PP_0350 0.73 +1.4 427,134 + PP_0350 0.73 +0.0 427,134 + PP_0350 0.73 -1.4 427,134 + PP_0350 0.73 +0.3 427,134 + PP_0350 0.73 -0.6 427,135 - PP_0350 0.73 -1.4 427,213 + PP_0350 0.76 -0.7 427,249 + PP_0350 0.77 -0.2 427,251 + PP_0350 0.77 +0.4 427,251 + PP_0350 0.77 +0.3 427,251 + PP_0350 0.77 +0.4 427,251 + PP_0350 0.77 -1.0 427,252 - PP_0350 0.78 -0.4 427,252 - PP_0350 0.78 +0.4 427,383 + PP_0350 0.83 +0.8 427,383 + PP_0350 0.83 +0.1 427,384 - PP_0350 0.83 +1.2 427,482 + PP_0350 0.87 -0.6 427,482 + PP_0350 0.87 -0.3 427,482 + PP_0350 0.87 -0.9 427,483 - PP_0350 0.87 +2.1 427,558 - -0.8 427,558 - -1.1 427,680 + +1.8 427,680 + -0.8 427,681 - +2.8 427,777 + -0.6 427,777 + -1.0 427,777 + -0.4 427,778 - +0.5 427,778 - +0.5 427,973 + +1.9 427,973 + +1.4 427,996 - +2.5 428,051 + +1.6 428,051 + -0.7 428,082 + +1.3 428,082 + +0.4 428,083 - +7.2 428,083 - +7.1 428,248 + PP_0351 0.21 +2.7 428,248 + PP_0351 0.21 +5.7 428,248 + PP_0351 0.21 +5.5 428,249 - PP_0351 0.21 +7.4 428,249 - PP_0351 0.21 +6.7 428,249 - PP_0351 0.21 +7.0 428,425 - PP_0351 0.39 +6.6 428,492 - PP_0351 0.46 +7.0 428,577 - PP_0351 0.55 +9.1 428,645 - PP_0351 0.62 +6.2 428,645 - PP_0351 0.62 +6.4 428,645 - PP_0351 0.62 +5.6 428,682 - PP_0351 0.66 +1.4 428,682 - PP_0351 0.66 +2.3
Or see this region's nucleotide sequence