Strain Fitness in Pseudomonas putida KT2440 around PP_0349

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0348 and PP_5443 are separated by 67 nucleotidesPP_5443 and PP_0349 overlap by 4 nucleotidesPP_0349 and PP_0350 are separated by 56 nucleotides PP_0348: PP_0348 - conserved protein of unknown function, at 421,161 to 423,947 _0348 PP_5443: PP_5443 - conserved protein of unknown function, at 424,015 to 424,200 _5443 PP_0349: PP_0349 - putative Membrane protein, at 424,197 to 425,309 _0349 PP_0350: PP_0350 - Outer membrane ferrichrome-iron receptor, at 425,366 to 427,798 _0350 Position (kb) 424 425 426Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.201 kb on - strand, within PP_0348at 423.201 kb on - strand, within PP_0348at 423.201 kb on - strand, within PP_0348at 423.204 kb on + strand, within PP_0348at 423.205 kb on - strand, within PP_0348at 423.205 kb on - strand, within PP_0348at 423.276 kb on + strand, within PP_0348at 423.277 kb on - strand, within PP_0348at 423.277 kb on - strand, within PP_0348at 423.277 kb on - strand, within PP_0348at 423.325 kb on + strand, within PP_0348at 423.326 kb on - strand, within PP_0348at 423.326 kb on - strand, within PP_0348at 423.373 kb on + strand, within PP_0348at 423.373 kb on + strand, within PP_0348at 423.568 kb on + strand, within PP_0348at 423.569 kb on - strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.681 kb on + strandat 423.681 kb on + strandat 423.681 kb on + strandat 423.681 kb on + strandat 423.682 kb on - strandat 423.988 kb on + strandat 423.989 kb on - strandat 424.244 kb on - strandat 424.244 kb on - strandat 424.319 kb on - strand, within PP_0349at 424.363 kb on + strand, within PP_0349at 424.416 kb on + strand, within PP_0349at 424.417 kb on - strand, within PP_0349at 424.472 kb on - strand, within PP_0349at 424.472 kb on - strand, within PP_0349at 424.472 kb on - strand, within PP_0349at 424.674 kb on + strand, within PP_0349at 424.774 kb on - strand, within PP_0349at 424.810 kb on + strand, within PP_0349at 424.810 kb on + strand, within PP_0349at 424.811 kb on - strand, within PP_0349at 424.848 kb on + strand, within PP_0349at 424.848 kb on + strand, within PP_0349at 424.849 kb on - strand, within PP_0349at 424.849 kb on - strand, within PP_0349at 425.179 kb on - strand, within PP_0349at 425.207 kb on + strandat 425.208 kb on - strandat 425.208 kb on - strandat 425.208 kb on - strandat 425.249 kb on + strandat 425.249 kb on + strandat 425.250 kb on - strandat 425.376 kb on + strandat 425.376 kb on + strandat 425.376 kb on + strandat 425.377 kb on - strandat 425.377 kb on - strandat 425.377 kb on - strandat 425.377 kb on - strandat 425.412 kb on + strandat 425.412 kb on + strandat 425.412 kb on + strandat 425.415 kb on + strandat 425.416 kb on - strandat 425.416 kb on - strandat 425.416 kb on - strandat 425.421 kb on + strandat 425.421 kb on + strandat 425.421 kb on + strandat 425.422 kb on - strandat 425.422 kb on - strandat 425.422 kb on - strandat 425.422 kb on - strandat 425.424 kb on + strandat 425.424 kb on + strandat 425.424 kb on + strandat 425.424 kb on + strandat 425.425 kb on - strandat 425.425 kb on - strandat 425.438 kb on - strandat 425.438 kb on - strandat 425.438 kb on - strandat 425.445 kb on + strandat 425.446 kb on - strandat 425.446 kb on - strandat 425.523 kb on + strandat 425.550 kb on + strandat 425.571 kb on + strandat 425.572 kb on - strandat 425.572 kb on - strandat 425.575 kb on + strandat 425.576 kb on - strandat 425.576 kb on - strandat 425.576 kb on - strandat 425.576 kb on - strandat 425.576 kb on - strandat 425.596 kb on + strandat 425.596 kb on + strandat 425.596 kb on + strandat 425.597 kb on - strandat 425.597 kb on - strandat 425.605 kb on + strandat 425.661 kb on + strand, within PP_0350at 425.661 kb on + strand, within PP_0350at 425.661 kb on + strand, within PP_0350at 425.662 kb on - strand, within PP_0350at 425.754 kb on + strand, within PP_0350at 425.941 kb on - strand, within PP_0350at 426.037 kb on - strand, within PP_0350at 426.073 kb on - strand, within PP_0350at 426.115 kb on + strand, within PP_0350at 426.197 kb on - strand, within PP_0350at 426.197 kb on - strand, within PP_0350at 426.222 kb on + strand, within PP_0350at 426.222 kb on + strand, within PP_0350at 426.222 kb on + strand, within PP_0350at 426.223 kb on - strand, within PP_0350at 426.223 kb on - strand, within PP_0350at 426.223 kb on - strand, within PP_0350at 426.252 kb on + strand, within PP_0350at 426.258 kb on + strand, within PP_0350

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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423,200 + PP_0348 0.73 -0.7
423,200 + PP_0348 0.73 -2.5
423,200 + PP_0348 0.73 +0.7
423,200 + PP_0348 0.73 +1.2
423,200 + PP_0348 0.73 +0.9
423,201 - PP_0348 0.73 +0.0
423,201 - PP_0348 0.73 -0.8
423,201 - PP_0348 0.73 -0.4
423,204 + PP_0348 0.73 -0.7
423,205 - PP_0348 0.73 +2.3
423,205 - PP_0348 0.73 -0.7
423,276 + PP_0348 0.76 +0.5
423,277 - PP_0348 0.76 +0.7
423,277 - PP_0348 0.76 +0.9
423,277 - PP_0348 0.76 -1.2
423,325 + PP_0348 0.78 -0.3
423,326 - PP_0348 0.78 +0.7
423,326 - PP_0348 0.78 +0.3
423,373 + PP_0348 0.79 -0.5
423,373 + PP_0348 0.79 +1.1
423,568 + PP_0348 0.86 -0.7
423,569 - PP_0348 0.86 +0.7
423,638 + PP_0348 0.89 +2.8
423,638 + PP_0348 0.89 +0.7
423,638 + PP_0348 0.89 +2.2
423,638 + PP_0348 0.89 -0.3
423,639 - PP_0348 0.89 +0.2
423,639 - PP_0348 0.89 +1.2
423,639 - PP_0348 0.89 +0.1
423,639 - PP_0348 0.89 +1.0
423,639 - PP_0348 0.89 +2.1
423,681 + -1.4
423,681 + +0.2
423,681 + -1.4
423,681 + -1.3
423,682 - -0.2
423,988 + -1.6
423,989 - -0.4
424,244 - -0.0
424,244 - -1.3
424,319 - PP_0349 0.11 +0.8
424,363 + PP_0349 0.15 -2.9
424,416 + PP_0349 0.20 +0.9
424,417 - PP_0349 0.20 +1.5
424,472 - PP_0349 0.25 -1.4
424,472 - PP_0349 0.25 +1.0
424,472 - PP_0349 0.25 -1.3
424,674 + PP_0349 0.43 -0.2
424,774 - PP_0349 0.52 +0.5
424,810 + PP_0349 0.55 +0.5
424,810 + PP_0349 0.55 -0.4
424,811 - PP_0349 0.55 +0.0
424,848 + PP_0349 0.58 -1.5
424,848 + PP_0349 0.58 -0.9
424,849 - PP_0349 0.59 +0.1
424,849 - PP_0349 0.59 -0.3
425,179 - PP_0349 0.88 -0.0
425,207 + +2.1
425,208 - +0.3
425,208 - -0.3
425,208 - -0.1
425,249 + -1.3
425,249 + +0.7
425,250 - -1.7
425,376 + -0.1
425,376 + -0.6
425,376 + -1.0
425,377 - -0.2
425,377 - -0.6
425,377 - +0.2
425,377 - -1.1
425,412 + -2.1
425,412 + +0.1
425,412 + -0.1
425,415 + -0.7
425,416 - -0.7
425,416 - -0.4
425,416 - -1.7
425,421 + +0.2
425,421 + +3.1
425,421 + +0.2
425,422 - -0.1
425,422 - -0.5
425,422 - -0.2
425,422 - -0.7
425,424 + +0.9
425,424 + -3.0
425,424 + +0.4
425,424 + -0.3
425,425 - -0.0
425,425 - +0.4
425,438 - -0.2
425,438 - +1.0
425,438 - +2.8
425,445 + -0.3
425,446 - -0.1
425,446 - -1.0
425,523 + +0.2
425,550 + +1.7
425,571 + +0.0
425,572 - -1.5
425,572 - -0.1
425,575 + -2.5
425,576 - +0.5
425,576 - +0.4
425,576 - +1.0
425,576 - +0.0
425,576 - -1.3
425,596 + -0.7
425,596 + +4.0
425,596 + -0.1
425,597 - +1.6
425,597 - -0.8
425,605 + -0.3
425,661 + PP_0350 0.12 -0.2
425,661 + PP_0350 0.12 +0.2
425,661 + PP_0350 0.12 -0.6
425,662 - PP_0350 0.12 -1.9
425,754 + PP_0350 0.16 -2.1
425,941 - PP_0350 0.24 -0.8
426,037 - PP_0350 0.28 -0.8
426,073 - PP_0350 0.29 +1.1
426,115 + PP_0350 0.31 +0.3
426,197 - PP_0350 0.34 +0.2
426,197 - PP_0350 0.34 +0.8
426,222 + PP_0350 0.35 -0.0
426,222 + PP_0350 0.35 -0.1
426,222 + PP_0350 0.35 -0.5
426,223 - PP_0350 0.35 +1.4
426,223 - PP_0350 0.35 +0.7
426,223 - PP_0350 0.35 +0.1
426,252 + PP_0350 0.36 -2.9
426,258 + PP_0350 0.37 +0.6

Or see this region's nucleotide sequence