Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0332 and PP_0333 are separated by 181 nucleotides PP_0333 and PP_0334 are separated by 149 nucleotides PP_0334 and PP_0335 are separated by 428 nucleotides
PP_0332: PP_0332 - putative Acyltransferase, at 398,696 to 399,583
_0332
PP_0333: PP_0333 - conserved exported protein of unknown function, at 399,765 to 400,265
_0333
PP_0334: PP_0334 - transposase, at 400,415 to 401,473
_0334
PP_0335: PP_0335 - Glutathione S-transferase family protein, at 401,902 to 402,525
_0335
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 399.524 kb on + strand at 399.524 kb on + strand at 399.525 kb on - strand at 399.532 kb on + strand at 399.533 kb on - strand at 399.553 kb on + strand at 399.554 kb on - strand at 399.583 kb on + strand at 399.584 kb on - strand at 399.584 kb on - strand at 399.608 kb on - strand at 399.608 kb on - strand at 399.608 kb on - strand at 399.624 kb on + strand at 399.625 kb on - strand at 399.625 kb on - strand at 399.641 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.688 kb on - strand at 399.696 kb on + strand at 399.697 kb on - strand at 399.697 kb on - strand at 399.716 kb on + strand at 399.717 kb on - strand at 399.735 kb on - strand at 399.778 kb on + strand at 399.827 kb on + strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.831 kb on + strand, within PP_0333 at 399.831 kb on + strand, within PP_0333 at 399.841 kb on - strand, within PP_0333 at 399.848 kb on + strand, within PP_0333 at 399.849 kb on - strand, within PP_0333 at 400.005 kb on + strand, within PP_0333 at 400.005 kb on + strand, within PP_0333 at 400.006 kb on - strand, within PP_0333 at 400.173 kb on + strand, within PP_0333 at 400.282 kb on + strand at 400.282 kb on + strand at 400.283 kb on - strand at 400.283 kb on - strand at 400.283 kb on - strand at 400.290 kb on - strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.666 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.702 kb on + strand at 401.702 kb on + strand at 401.703 kb on - strand at 401.723 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.728 kb on - strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.749 kb on - strand at 401.749 kb on - strand at 401.752 kb on + strand at 401.752 kb on + strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.849 kb on + strand at 401.850 kb on - strand at 401.873 kb on + strand at 401.873 kb on + strand at 401.954 kb on + strand at 401.955 kb on - strand at 401.955 kb on - strand at 402.018 kb on - strand, within PP_0335 at 402.180 kb on - strand, within PP_0335 at 402.223 kb on + strand, within PP_0335 at 402.224 kb on - strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 399,524 + -0.0 399,524 + -0.4 399,525 - +1.0 399,532 + +0.0 399,533 - -1.7 399,553 + -0.1 399,554 - +1.1 399,583 + -0.7 399,584 - -0.3 399,584 - -2.0 399,608 - +1.5 399,608 - -0.0 399,608 - -2.3 399,624 + +0.6 399,625 - -0.5 399,625 - -2.3 399,641 + -0.1 399,687 + +0.7 399,687 + +0.5 399,687 + +1.1 399,687 + -0.4 399,688 - -0.5 399,696 + -0.7 399,697 - +0.5 399,697 - +2.2 399,716 + -1.7 399,717 - -1.1 399,735 - +2.4 399,778 + -0.4 399,827 + PP_0333 0.12 -1.9 399,828 - PP_0333 0.13 -0.7 399,828 - PP_0333 0.13 +0.1 399,828 - PP_0333 0.13 -2.4 399,828 - PP_0333 0.13 +0.5 399,831 + PP_0333 0.13 -2.2 399,831 + PP_0333 0.13 +0.2 399,841 - PP_0333 0.15 +0.9 399,848 + PP_0333 0.17 -1.0 399,849 - PP_0333 0.17 +0.1 400,005 + PP_0333 0.48 -1.6 400,005 + PP_0333 0.48 -1.2 400,006 - PP_0333 0.48 +0.5 400,173 + PP_0333 0.81 -0.6 400,282 + +1.0 400,282 + +0.9 400,283 - -0.3 400,283 - +0.5 400,283 - +0.5 400,290 - -0.1 401,662 + +0.4 401,662 + +0.1 401,662 + -1.5 401,662 + +0.2 401,666 + -0.7 401,684 + -1.6 401,684 + -1.0 401,684 + -1.7 401,684 + -1.5 401,684 + -1.3 401,702 + -0.2 401,702 + -0.8 401,703 - +0.7 401,723 + -0.5 401,727 + +0.5 401,727 + -1.2 401,727 + +1.2 401,727 + -1.4 401,728 - +0.4 401,748 + +0.4 401,748 + -0.5 401,748 + +1.1 401,748 + +0.9 401,748 + +0.4 401,748 + -2.0 401,748 + -0.8 401,748 + +0.6 401,749 - -0.6 401,749 - +1.6 401,752 + +1.3 401,752 + -0.8 401,753 - +0.8 401,753 - +0.6 401,753 - -0.7 401,753 - -0.4 401,780 + +1.8 401,780 + +0.9 401,780 + +0.7 401,781 - +0.6 401,781 - +1.9 401,781 - -0.9 401,781 - +1.2 401,849 + -0.6 401,850 - +3.8 401,873 + -0.3 401,873 + +1.1 401,954 + +0.6 401,955 - +0.6 401,955 - +0.8 402,018 - PP_0335 0.19 +0.5 402,180 - PP_0335 0.45 -1.0 402,223 + PP_0335 0.51 -0.7 402,224 - PP_0335 0.52 -0.0 402,412 + PP_0335 0.82 -1.1 402,412 + PP_0335 0.82 -1.9 402,412 + PP_0335 0.82 +0.4 402,412 + PP_0335 0.82 -0.6 402,412 + PP_0335 0.82 -0.5 402,413 - PP_0335 0.82 +0.0 402,413 - PP_0335 0.82 -0.7 402,413 - PP_0335 0.82 -0.3 402,413 - PP_0335 0.82 -1.0
Or see this region's nucleotide sequence