Strain Fitness in Pseudomonas putida KT2440 around PP_0333

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
398,860	+		PP_0332	0.18	+0.5
398,900	-		PP_0332	0.23	-0.9
399,001	-		PP_0332	0.34	-0.5
399,007	-		PP_0332	0.35	-0.7
399,061	-		PP_0332	0.41	+1.5
399,265	+		PP_0332	0.64	+0.1
399,265	+		PP_0332	0.64	-0.5
399,266	-		PP_0332	0.64	-1.4
399,524	+				-0.0
399,524	+				-0.4
399,525	-				+1.0
399,532	+				+0.0
399,533	-				-1.7
399,553	+				-0.1
399,554	-				+1.1
399,583	+				-0.7
399,584	-				-0.3
399,584	-				-2.0
399,608	-				+1.5
399,608	-				-0.0
399,608	-				-2.3
399,624	+				+0.6
399,625	-				-0.5
399,625	-				-2.3
399,641	+				-0.1
399,687	+				+0.7
399,687	+				+0.5
399,687	+				+1.1
399,687	+				-0.4
399,688	-				-0.5
399,696	+				-0.7
399,697	-				+0.5
399,697	-				+2.2
399,716	+				-1.7
399,717	-				-1.1
399,735	-				+2.4
399,778	+				-0.4
399,827	+		PP_0333	0.12	-1.9
399,828	-		PP_0333	0.13	-0.7
399,828	-		PP_0333	0.13	+0.1
399,828	-		PP_0333	0.13	-2.4
399,828	-		PP_0333	0.13	+0.5
399,831	+		PP_0333	0.13	-2.2
399,831	+		PP_0333	0.13	+0.2
399,841	-		PP_0333	0.15	+0.9
399,848	+		PP_0333	0.17	-1.0
399,849	-		PP_0333	0.17	+0.1
400,005	+		PP_0333	0.48	-1.6
400,005	+		PP_0333	0.48	-1.2
400,006	-		PP_0333	0.48	+0.5
400,173	+		PP_0333	0.81	-0.6
400,282	+				+1.0
400,282	+				+0.9
400,283	-				-0.3
400,283	-				+0.5
400,283	-				+0.5
400,290	-				-0.1