Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0189 and PP_0190 are separated by 222 nucleotides PP_0190 and PP_0191 are separated by 231 nucleotides PP_0191 and PP_0192 are separated by 8 nucleotides PP_0192 and PP_0194 are separated by 154 nucleotides
PP_0189: PP_0189 - putative heme biosynthesis protein, at 240,830 to 242,068
_0189
PP_0190: PP_0190 - putative disulfide bond formation protein B, at 242,291 to 242,797
_0190
PP_0191: PP_0191 - Transcriptional regulatory protein AlgQ, at 243,029 to 243,499
_0191
PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170
_0192
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 242.112 kb on + strand at 242.117 kb on + strand at 242.166 kb on + strand at 242.173 kb on + strand at 242.174 kb on - strand at 242.349 kb on + strand, within PP_0190 at 242.349 kb on + strand, within PP_0190 at 242.350 kb on - strand, within PP_0190 at 242.350 kb on - strand, within PP_0190 at 242.496 kb on - strand at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.768 kb on + strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.847 kb on + strand at 242.850 kb on + strand at 242.860 kb on + strand at 242.880 kb on + strand at 242.880 kb on + strand at 242.907 kb on + strand at 242.908 kb on - strand at 242.924 kb on + strand at 243.006 kb on + strand at 243.037 kb on + strand at 243.038 kb on - strand at 243.203 kb on + strand, within PP_0191 at 243.203 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.554 kb on + strand at 243.554 kb on + strand at 243.554 kb on + strand at 243.555 kb on - strand at 243.590 kb on + strand, within PP_0192 at 243.590 kb on + strand, within PP_0192 at 243.610 kb on + strand, within PP_0192 at 243.611 kb on - strand, within PP_0192 at 243.743 kb on + strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.807 kb on - strand, within PP_0192 at 243.824 kb on - strand, within PP_0192 at 243.824 kb on - strand, within PP_0192 at 243.839 kb on + strand, within PP_0192 at 243.839 kb on + strand, within PP_0192 at 243.856 kb on - strand, within PP_0192 at 243.978 kb on - strand, within PP_0192 at 244.067 kb on + strand, within PP_0192 at 244.068 kb on - strand, within PP_0192 at 244.136 kb on + strand at 244.137 kb on - strand at 244.162 kb on + strand at 244.187 kb on + strand at 244.187 kb on + strand at 244.188 kb on - strand at 244.188 kb on - strand at 244.188 kb on - strand at 244.210 kb on + strand at 244.242 kb on - strand at 244.249 kb on - strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.291 kb on - strand at 244.291 kb on - strand at 244.319 kb on + strand at 244.347 kb on + strand at 244.351 kb on + strand at 244.352 kb on - strand at 244.359 kb on + strand at 244.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 242,112 + +0.1 242,117 + +0.4 242,166 + +0.4 242,173 + +0.2 242,174 - -0.3 242,349 + PP_0190 0.11 -2.3 242,349 + PP_0190 0.11 +2.4 242,350 - PP_0190 0.12 -0.7 242,350 - PP_0190 0.12 -1.3 242,496 - -1.4 242,587 - PP_0190 0.58 -0.1 242,587 - PP_0190 0.58 -1.2 242,587 - PP_0190 0.58 -0.3 242,587 - PP_0190 0.58 +0.0 242,587 - PP_0190 0.58 +0.3 242,768 + +2.3 242,840 - -1.5 242,840 - -1.9 242,840 - -1.3 242,847 + +1.1 242,850 + -0.7 242,860 + +0.2 242,880 + +1.9 242,880 + -0.6 242,907 + -0.5 242,908 - -1.3 242,924 + -0.1 243,006 + -1.2 243,037 + -0.4 243,038 - -1.1 243,203 + PP_0191 0.37 -1.1 243,203 + PP_0191 0.37 -2.4 243,319 + PP_0191 0.62 -2.3 243,319 + PP_0191 0.62 -1.6 243,554 + +0.9 243,554 + -0.4 243,554 + +1.0 243,555 - -1.2 243,590 + PP_0192 0.12 +1.3 243,590 + PP_0192 0.12 +0.9 243,610 + PP_0192 0.15 -1.4 243,611 - PP_0192 0.16 -0.6 243,743 + PP_0192 0.35 -0.0 243,744 - PP_0192 0.36 +0.6 243,744 - PP_0192 0.36 +1.1 243,744 - PP_0192 0.36 +0.4 243,807 - PP_0192 0.45 -0.1 243,824 - PP_0192 0.48 -0.4 243,824 - PP_0192 0.48 -0.7 243,839 + PP_0192 0.50 +0.6 243,839 + PP_0192 0.50 +0.4 243,856 - PP_0192 0.52 -0.4 243,978 - PP_0192 0.71 +0.9 244,067 + PP_0192 0.84 +0.6 244,068 - PP_0192 0.84 -0.5 244,136 + -0.4 244,137 - +0.6 244,162 + -1.0 244,187 + +0.1 244,187 + +1.2 244,188 - -1.0 244,188 - +0.2 244,188 - +0.3 244,210 + +1.6 244,242 - -0.6 244,249 - -1.3 244,287 + -0.4 244,287 + -0.3 244,287 + +0.8 244,287 + -0.6 244,288 - +1.0 244,288 - -0.3 244,288 - +0.5 244,288 - -0.1 244,288 - -1.9 244,290 + -2.0 244,290 + +0.5 244,290 + -0.1 244,290 + -1.4 244,291 - -3.1 244,291 - +0.4 244,319 + +0.2 244,347 + -1.4 244,351 + -1.0 244,352 - +1.1 244,359 + -2.1 244,360 - -0.8
Or see this region's nucleotide sequence