Strain Fitness in Pseudomonas putida KT2440 around PP_0178

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0176 and PP_0177 overlap by 4 nucleotidesPP_0177 and PP_0178 overlap by 4 nucleotidesPP_0178 and PP_0179 overlap by 4 nucleotides PP_0176: PP_0176 - putative efflux transporter, at 227,175 to 229,262 _0176 PP_0177: PP_0177 - conserved protein of unknown function, at 229,259 to 229,471 _0177 PP_0178: PP_0178 - putative efflux pump, at 229,468 to 230,343 _0178 PP_0179: PP_0179 - putative efflux transporter, at 230,340 to 231,758 _0179 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 228.553 kb on + strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.554 kb on - strand, within PP_0176at 228.554 kb on - strand, within PP_0176at 228.568 kb on + strand, within PP_0176at 228.569 kb on - strand, within PP_0176at 228.582 kb on + strand, within PP_0176at 228.582 kb on + strand, within PP_0176at 228.583 kb on - strand, within PP_0176at 228.583 kb on - strand, within PP_0176at 228.659 kb on + strand, within PP_0176at 228.710 kb on + strand, within PP_0176at 228.710 kb on + strand, within PP_0176at 228.710 kb on + strand, within PP_0176at 228.838 kb on + strand, within PP_0176at 228.838 kb on + strand, within PP_0176at 228.954 kb on + strand, within PP_0176at 228.955 kb on - strand, within PP_0176at 229.122 kb on + strandat 229.122 kb on + strandat 229.123 kb on - strandat 229.184 kb on - strandat 229.325 kb on + strand, within PP_0177at 229.325 kb on + strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.558 kb on + strand, within PP_0178at 229.558 kb on + strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.954 kb on + strand, within PP_0178at 229.954 kb on + strand, within PP_0178at 229.955 kb on - strand, within PP_0178at 230.035 kb on + strand, within PP_0178at 230.035 kb on + strand, within PP_0178at 230.036 kb on - strand, within PP_0178at 230.077 kb on - strand, within PP_0178at 230.082 kb on + strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.229 kb on - strand, within PP_0178at 230.406 kb on + strandat 230.406 kb on + strandat 230.517 kb on + strand, within PP_0179at 230.758 kb on - strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.881 kb on - strand, within PP_0179at 230.881 kb on - strand, within PP_0179at 230.881 kb on - strand, within PP_0179at 230.882 kb on + strand, within PP_0179at 230.883 kb on - strand, within PP_0179at 230.883 kb on - strand, within PP_0179at 230.910 kb on + strand, within PP_0179at 230.911 kb on - strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.255 kb on + strand, within PP_0179at 231.255 kb on + strand, within PP_0179at 231.256 kb on - strand, within PP_0179at 231.257 kb on + strand, within PP_0179at 231.258 kb on - strand, within PP_0179at 231.258 kb on - strand, within PP_0179

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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228,553 + PP_0176 0.66 +0.5
228,553 + PP_0176 0.66 +1.3
228,553 + PP_0176 0.66 +0.4
228,553 + PP_0176 0.66 +1.1
228,554 - PP_0176 0.66 +1.4
228,554 - PP_0176 0.66 +2.1
228,568 + PP_0176 0.67 -0.3
228,569 - PP_0176 0.67 +0.4
228,582 + PP_0176 0.67 +0.5
228,582 + PP_0176 0.67 -0.3
228,583 - PP_0176 0.67 -0.4
228,583 - PP_0176 0.67 -0.2
228,659 + PP_0176 0.71 -1.0
228,710 + PP_0176 0.74 -0.4
228,710 + PP_0176 0.74 -0.9
228,710 + PP_0176 0.74 +0.1
228,838 + PP_0176 0.80 -0.1
228,838 + PP_0176 0.80 +1.1
228,954 + PP_0176 0.85 -0.5
228,955 - PP_0176 0.85 +0.2
229,122 + +1.7
229,122 + -1.4
229,123 - +1.6
229,184 - +2.1
229,325 + PP_0177 0.31 +1.2
229,325 + PP_0177 0.31 +1.7
229,326 - PP_0177 0.31 +0.4
229,326 - PP_0177 0.31 -1.1
229,326 - PP_0177 0.31 +0.8
229,326 - PP_0177 0.31 +0.6
229,415 + PP_0177 0.73 +1.0
229,415 + PP_0177 0.73 +0.1
229,415 + PP_0177 0.73 +0.6
229,416 - PP_0177 0.74 +0.7
229,416 - PP_0177 0.74 +2.3
229,416 - PP_0177 0.74 +2.2
229,416 - PP_0177 0.74 +0.7
229,558 + PP_0178 0.10 +0.1
229,558 + PP_0178 0.10 -0.1
229,559 - PP_0178 0.10 +1.7
229,559 - PP_0178 0.10 -1.1
229,559 - PP_0178 0.10 +0.9
229,561 + PP_0178 0.11 +1.3
229,561 + PP_0178 0.11 +1.3
229,561 + PP_0178 0.11 +1.0
229,561 + PP_0178 0.11 -0.3
229,561 + PP_0178 0.11 -0.0
229,562 - PP_0178 0.11 +1.1
229,562 - PP_0178 0.11 +2.9
229,562 - PP_0178 0.11 +2.3
229,562 - PP_0178 0.11 +0.5
229,562 - PP_0178 0.11 -0.6
229,954 + PP_0178 0.55 +2.4
229,954 + PP_0178 0.55 -1.4
229,955 - PP_0178 0.56 +0.7
230,035 + PP_0178 0.65 +2.8
230,035 + PP_0178 0.65 +1.4
230,036 - PP_0178 0.65 +1.5
230,077 - PP_0178 0.70 +0.7
230,082 + PP_0178 0.70 +0.4
230,083 - PP_0178 0.70 +0.6
230,083 - PP_0178 0.70 -0.4
230,083 - PP_0178 0.70 +1.0
230,229 - PP_0178 0.87 -0.2
230,406 + +2.9
230,406 + -1.9
230,517 + PP_0179 0.12 -0.2
230,758 - PP_0179 0.29 -0.3
230,880 + PP_0179 0.38 +0.4
230,880 + PP_0179 0.38 -0.2
230,880 + PP_0179 0.38 -2.5
230,880 + PP_0179 0.38 +2.1
230,881 - PP_0179 0.38 +0.5
230,881 - PP_0179 0.38 -0.0
230,881 - PP_0179 0.38 +1.6
230,882 + PP_0179 0.38 +0.6
230,883 - PP_0179 0.38 +1.2
230,883 - PP_0179 0.38 +2.1
230,910 + PP_0179 0.40 +0.2
230,911 - PP_0179 0.40 +2.2
231,081 + PP_0179 0.52 -0.9
231,081 + PP_0179 0.52 -1.5
231,081 + PP_0179 0.52 -0.8
231,081 + PP_0179 0.52 -0.3
231,081 + PP_0179 0.52 +0.3
231,081 + PP_0179 0.52 -1.5
231,081 + PP_0179 0.52 -2.4
231,082 - PP_0179 0.52 +1.1
231,082 - PP_0179 0.52 -0.6
231,082 - PP_0179 0.52 +1.2
231,082 - PP_0179 0.52 +0.5
231,082 - PP_0179 0.52 -1.3
231,082 - PP_0179 0.52 +1.2
231,082 - PP_0179 0.52 -0.8
231,082 - PP_0179 0.52 +0.7
231,255 + PP_0179 0.64 +1.7
231,255 + PP_0179 0.64 +2.1
231,256 - PP_0179 0.65 +0.9
231,257 + PP_0179 0.65 +1.2
231,258 - PP_0179 0.65 +0.6
231,258 - PP_0179 0.65 +0.5

Or see this region's nucleotide sequence