Strain Fitness in Pseudomonas putida KT2440 around PP_0155

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0154 and PP_0155 are separated by 186 nucleotidesPP_0155 and PP_5747 are separated by 2 nucleotidesPP_5747 and PP_0156 are separated by 11 nucleotides PP_0154: PP_0154 - Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data), at 162,340 to 163,833 _0154 PP_0155: PP_0155 - pyridine nucleotide transhydrogenase, beta subunit, at 164,020 to 165,456 _0155 PP_5747: PP_5747 - pyridine nucleotide transhydrogenase subunit alpha, at 165,459 to 165,773 _5747 PP_0156: PP_0156 - pyridine nucleotide transhydrogenase subunit alpha, at 165,785 to 166,906 _0156 Position (kb) 164 165 166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 163.078 kb on - strand, within PP_0154at 163.195 kb on - strand, within PP_0154at 163.249 kb on + strand, within PP_0154at 163.249 kb on + strand, within PP_0154at 163.249 kb on + strand, within PP_0154at 163.286 kb on + strand, within PP_0154at 163.286 kb on + strand, within PP_0154at 163.287 kb on - strand, within PP_0154at 163.296 kb on + strand, within PP_0154at 163.296 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strandat 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.519 kb on + strand, within PP_0154at 163.789 kb on + strandat 163.789 kb on + strandat 163.790 kb on - strandat 163.790 kb on - strandat 163.790 kb on - strandat 163.819 kb on - strandat 163.829 kb on + strandat 163.829 kb on + strandat 163.830 kb on - strandat 163.830 kb on - strandat 163.830 kb on - strandat 163.841 kb on + strandat 163.842 kb on - strandat 163.842 kb on - strandat 163.842 kb on - strandat 163.842 kb on - strandat 163.861 kb on - strandat 163.861 kb on - strandat 163.913 kb on + strandat 163.913 kb on + strandat 163.913 kb on + strandat 163.913 kb on + strandat 163.914 kb on - strandat 163.914 kb on - strandat 163.928 kb on - strandat 163.928 kb on - strandat 163.928 kb on - strandat 163.992 kb on + strandat 163.992 kb on + strandat 163.993 kb on - strandat 163.995 kb on - strandat 163.995 kb on - strandat 163.995 kb on - strandat 164.093 kb on + strandat 164.094 kb on - strandat 164.120 kb on + strandat 164.305 kb on + strand, within PP_0155at 164.306 kb on - strand, within PP_0155at 164.341 kb on + strand, within PP_0155at 164.341 kb on + strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.361 kb on + strand, within PP_0155at 164.362 kb on - strand, within PP_0155at 164.362 kb on - strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.455 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.675 kb on - strand, within PP_0155at 164.747 kb on + strand, within PP_0155at 164.799 kb on + strand, within PP_0155at 164.799 kb on + strand, within PP_0155at 164.855 kb on + strand, within PP_0155at 164.855 kb on + strand, within PP_0155at 164.855 kb on + strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.942 kb on - strand, within PP_0155at 164.972 kb on + strand, within PP_0155at 164.972 kb on + strand, within PP_0155at 165.018 kb on + strand, within PP_0155at 165.018 kb on + strand, within PP_0155at 165.018 kb on + strand, within PP_0155at 165.019 kb on - strand, within PP_0155at 165.019 kb on - strand, within PP_0155at 165.019 kb on - strand, within PP_0155at 165.260 kb on + strand, within PP_0155at 165.260 kb on + strand, within PP_0155at 165.297 kb on + strand, within PP_0155at 165.297 kb on + strand, within PP_0155at 165.297 kb on + strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.299 kb on + strand, within PP_0155at 165.299 kb on + strand, within PP_0155at 165.300 kb on - strand, within PP_0155at 165.300 kb on - strand, within PP_0155at 165.428 kb on + strandat 165.428 kb on + strandat 165.429 kb on - strandat 165.460 kb on + strandat 165.461 kb on - strandat 165.461 kb on - strandat 165.703 kb on + strand, within PP_5747at 165.704 kb on - strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.743 kb on - strandat 165.787 kb on - strandat 165.918 kb on + strand, within PP_0156at 165.918 kb on + strand, within PP_0156at 165.919 kb on - strand, within PP_0156at 166.400 kb on + strand, within PP_0156

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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163,078 - PP_0154 0.49 -1.8
163,195 - PP_0154 0.57 -0.5
163,249 + PP_0154 0.61 -2.1
163,249 + PP_0154 0.61 -1.1
163,249 + PP_0154 0.61 -2.5
163,286 + PP_0154 0.63 -1.3
163,286 + PP_0154 0.63 -1.6
163,287 - PP_0154 0.63 -2.4
163,296 + PP_0154 0.64 -2.4
163,296 + PP_0154 0.64 -3.6
163,298 + PP_0154 0.64 -1.5
163,298 + PP_0154 0.64 -2.2
163,298 + PP_0154 0.64 -1.0
163,298 + PP_0154 0.64 -1.4
163,298 + PP_0154 0.64 -0.7
163,298 + PP_0154 0.64 -3.0
163,298 + PP_0154 0.64 -2.6
163,298 + PP_0154 0.64 -1.6
163,298 + PP_0154 0.64 -1.7
163,298 + PP_0154 0.64 -1.8
163,298 + PP_0154 0.64 +1.3
163,298 + PP_0154 0.64 -2.0
163,298 + PP_0154 0.64 -1.1
163,298 + PP_0154 0.64 -1.7
163,298 + PP_0154 0.64 -1.9
163,299 - PP_0154 0.64 -1.5
163,299 - PP_0154 0.64 -2.3
163,299 - PP_0154 0.64 -1.3
163,299 - PP_0154 0.64 +0.2
163,299 - PP_0154 0.64 -1.1
163,299 - PP_0154 0.64 -0.4
163,299 - PP_0154 0.64 -2.4
163,299 - PP_0154 0.64 -1.0
163,299 - PP_0154 0.64 -2.2
163,299 - PP_0154 0.64 -0.0
163,299 - -0.4
163,299 - PP_0154 0.64 -1.6
163,299 - PP_0154 0.64 -1.3
163,299 - PP_0154 0.64 -1.4
163,299 - PP_0154 0.64 -2.6
163,299 - PP_0154 0.64 -2.1
163,299 - PP_0154 0.64 +0.4
163,299 - PP_0154 0.64 -2.0
163,299 - PP_0154 0.64 -2.1
163,299 - PP_0154 0.64 -2.1
163,299 - PP_0154 0.64 -1.5
163,299 - PP_0154 0.64 -3.7
163,299 - PP_0154 0.64 -2.5
163,299 - PP_0154 0.64 -1.0
163,299 - PP_0154 0.64 -2.1
163,519 + PP_0154 0.79 -0.8
163,789 + -2.3
163,789 + -1.9
163,790 - -0.6
163,790 - -1.9
163,790 - -1.1
163,819 - -0.1
163,829 + -1.4
163,829 + -4.5
163,830 - -2.0
163,830 - -1.5
163,830 - -2.8
163,841 + -1.4
163,842 - -0.1
163,842 - +0.1
163,842 - -2.6
163,842 - -1.6
163,861 - -1.3
163,861 - +0.3
163,913 + -2.2
163,913 + -0.1
163,913 + -3.1
163,913 + -0.9
163,914 - -0.1
163,914 - -0.9
163,928 - +0.9
163,928 - -1.5
163,928 - -2.5
163,992 + -0.6
163,992 + -2.1
163,993 - -1.5
163,995 - +0.1
163,995 - +0.8
163,995 - -0.9
164,093 + -1.2
164,094 - -2.1
164,120 + -1.6
164,305 + PP_0155 0.20 -1.2
164,306 - PP_0155 0.20 -0.2
164,341 + PP_0155 0.22 -1.4
164,341 + PP_0155 0.22 -0.9
164,342 - PP_0155 0.22 -2.2
164,342 - PP_0155 0.22 +0.3
164,342 - PP_0155 0.22 -1.0
164,342 - PP_0155 0.22 -1.3
164,361 + PP_0155 0.24 -1.4
164,362 - PP_0155 0.24 -0.8
164,362 - PP_0155 0.24 -1.0
164,387 + PP_0155 0.26 -1.2
164,387 + PP_0155 0.26 +0.2
164,387 + PP_0155 0.26 -1.9
164,387 + PP_0155 0.26 -0.8
164,455 + PP_0155 0.30 -0.9
164,648 + PP_0155 0.44 -4.2
164,648 + PP_0155 0.44 -0.9
164,648 + PP_0155 0.44 -1.0
164,649 - PP_0155 0.44 -0.9
164,649 - PP_0155 0.44 +0.7
164,649 - PP_0155 0.44 -0.7
164,675 - PP_0155 0.46 +1.2
164,747 + PP_0155 0.51 +0.7
164,799 + PP_0155 0.54 -0.1
164,799 + PP_0155 0.54 +0.7
164,855 + PP_0155 0.58 -1.1
164,855 + PP_0155 0.58 -0.2
164,855 + PP_0155 0.58 +0.2
164,856 - PP_0155 0.58 -0.2
164,856 - PP_0155 0.58 +0.2
164,856 - PP_0155 0.58 +0.4
164,856 - PP_0155 0.58 +0.0
164,856 - PP_0155 0.58 -1.4
164,942 - PP_0155 0.64 +1.5
164,972 + PP_0155 0.66 +0.7
164,972 + PP_0155 0.66 +0.6
165,018 + PP_0155 0.69 +0.2
165,018 + PP_0155 0.69 -2.1
165,018 + PP_0155 0.69 -0.6
165,019 - PP_0155 0.70 -1.6
165,019 - PP_0155 0.70 +0.1
165,019 - PP_0155 0.70 +1.2
165,260 + PP_0155 0.86 -0.2
165,260 + PP_0155 0.86 +2.5
165,297 + PP_0155 0.89 -1.1
165,297 + PP_0155 0.89 +0.1
165,297 + PP_0155 0.89 +0.8
165,298 - PP_0155 0.89 +0.1
165,298 - PP_0155 0.89 -2.1
165,298 - PP_0155 0.89 -0.7
165,298 - PP_0155 0.89 +0.8
165,299 + PP_0155 0.89 +1.2
165,299 + PP_0155 0.89 -2.0
165,300 - PP_0155 0.89 -1.8
165,300 - PP_0155 0.89 +0.6
165,428 + -0.8
165,428 + +0.1
165,429 - -0.5
165,460 + +0.9
165,461 - +0.6
165,461 - -1.6
165,703 + PP_5747 0.77 -0.2
165,704 - PP_5747 0.78 +1.0
165,712 + PP_5747 0.80 +1.2
165,712 + PP_5747 0.80 -1.2
165,712 + PP_5747 0.80 +0.7
165,712 + PP_5747 0.80 -1.1
165,712 + PP_5747 0.80 +0.3
165,712 + PP_5747 0.80 -0.6
165,712 + PP_5747 0.80 -1.6
165,713 - PP_5747 0.81 +0.6
165,713 - PP_5747 0.81 -1.5
165,713 - PP_5747 0.81 +0.6
165,713 - PP_5747 0.81 -0.2
165,713 - PP_5747 0.81 -1.5
165,743 - +1.1
165,787 - -1.7
165,918 + PP_0156 0.12 +0.3
165,918 + PP_0156 0.12 +2.3
165,919 - PP_0156 0.12 -1.0
166,400 + PP_0156 0.55 -2.3

Or see this region's nucleotide sequence