Strain Fitness in Pseudomonas putida KT2440 around PP_0144

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
151,217	+		PP_0143	0.13	-0.8
151,217	+		PP_0143	0.13	-2.7
151,218	-		PP_0143	0.13	+0.0
151,292	+		PP_0143	0.21	+0.0
151,334	+		PP_0143	0.25	-1.0
151,335	-		PP_0143	0.25	-1.8
151,335	-		PP_0143	0.25	-0.7
151,340	+		PP_0143	0.25	-0.9
151,340	+		PP_0143	0.25	-0.3
151,341	-		PP_0143	0.25	-2.6
151,341	-		PP_0143	0.25	-0.9
151,408	+		PP_0143	0.32	-0.2
151,408	+		PP_0143	0.32	-0.6
151,408	+		PP_0143	0.32	+0.2
151,408	+		PP_0143	0.32	+0.4
151,409	-		PP_0143	0.32	-1.5
151,409	-		PP_0143	0.32	-2.0
151,409	-		PP_0143	0.32	-0.8
151,416	+		PP_0143	0.33	-2.6
151,715	+		PP_0143	0.62	-0.2
151,715	+		PP_0143	0.62	+0.7
151,716	+		PP_0143	0.62	-0.4
151,716	-		PP_0143	0.62	-1.3
151,716	-		PP_0143	0.62	-1.7
151,716	-		PP_0143	0.62	+1.0
151,716	-		PP_0143	0.62	-0.4
151,716	-		PP_0143	0.62	-0.7
151,716	-		PP_0143	0.62	-0.5
151,718	+		PP_0143	0.62	+2.1
151,719	-		PP_0143	0.62	+0.0
152,089	-				+0.6
152,114	+				-0.4
152,114	+				-1.1
152,115	-				+1.4
152,115	-				+1.8
152,191	-				-0.3
152,214	+				+1.5
152,214	+				+0.1
152,214	+				+0.6
152,315	+				-0.5
152,320	+				+0.1
152,320	+				+1.2
152,320	+				+2.2
152,321	-				+1.1
152,321	-				+0.2
152,345	+		PP_0144	0.10	-0.6
152,345	+		PP_0144	0.10	+0.6
152,346	-		PP_0144	0.10	+1.3
152,346	-		PP_0144	0.10	+2.0
152,346	-		PP_0144	0.10	+1.0
152,346	-		PP_0144	0.10	+1.3
152,346	-		PP_0144	0.10	+0.7
152,442	+		PP_0144	0.17	-0.9
152,442	+		PP_0144	0.17	-0.8
152,442	+		PP_0144	0.17	+0.3
152,445	-		PP_0144	0.17	+0.9
152,445	-		PP_0144	0.17	-0.7
152,445	-		PP_0144	0.17	-0.4
152,445	-		PP_0144	0.17	+0.8
152,465	+		PP_0144	0.19	-0.5
152,465	+		PP_0144	0.19	-0.1
152,466	-		PP_0144	0.19	+0.8
152,466	-		PP_0144	0.19	+1.7
152,466	-		PP_0144	0.19	+1.1
152,466	-		PP_0144	0.19	-0.4
152,469	-		PP_0144	0.19	+1.2
152,691	-		PP_0144	0.35	+0.6
152,723	+		PP_0144	0.37	+0.7
152,940	-		PP_0144	0.53	+0.4
153,149	+		PP_0144	0.67	+0.2
153,149	+		PP_0144	0.67	+0.9
153,150	-		PP_0144	0.68	-0.2
153,150	-		PP_0144	0.68	-0.9
153,172	+		PP_0144	0.69	+0.9
153,172	+		PP_0144	0.69	+1.3
153,172	+		PP_0144	0.69	+0.7
153,173	-		PP_0144	0.69	-0.1
153,173	-		PP_0144	0.69	-0.7
153,306	+		PP_0144	0.79	+1.4
153,306	+		PP_0144	0.79	+1.9
153,306	+		PP_0144	0.79	+0.8
153,307	-		PP_0144	0.79	-1.1
153,485	+				+0.2
153,527	+				+0.4
153,527	+				-0.9
153,528	-				+1.2
153,528	-				+2.1
153,704	-				-3.5
153,710	+				-0.1
153,710	+				+0.0
153,710	+				-0.4
153,710	+				+0.9
153,710	+				-0.8
153,710	+				+1.0
153,710	+				-2.8
153,710	+				+1.0
153,710	+				-0.1
153,710	+				-1.9
153,711	-				-0.2
153,711	-				-1.4
153,711	-				-0.4
153,720	+				-3.3
153,720	+				-1.2
153,721	-				-1.9
153,769	+				-2.0
153,769	+				-2.4
153,786	+				-0.9
153,977	-		PP_0145	0.20	+0.7
154,142	+		PP_0145	0.30	-0.8
154,143	-		PP_0145	0.31	-1.2
154,160	+		PP_0145	0.32	-0.8
154,161	-		PP_0145	0.32	-1.5
154,381	+		PP_0145	0.45	-2.2
154,381	+		PP_0145	0.45	-0.5
154,451	+		PP_0145	0.49	-0.5
154,452	-		PP_0145	0.49	+0.1
154,452	-		PP_0145	0.49	-2.0
154,562	+		PP_0145	0.56	-2.0