Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0126 and PP_0127 are separated by 151 nucleotides PP_0127 and PP_0128 are separated by 12 nucleotides PP_0128 and PP_0129 are separated by 27 nucleotides
PP_0126: PP_0126 - Cytochrome c4, at 131,809 to 132,426
_0126
PP_0127: PP_0127 - Thiol:disulfide interchange protein, at 132,578 to 133,210
_0127
PP_0128: PP_0128 - conserved protein of unknown function, at 133,223 to 134,077
_0128
PP_0129: PP_0129 - GGDEF domain protein, at 134,105 to 136,042
_0129
Position (kb) 133
134
135 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 132.286 kb on + strand, within PP_0126 at 132.406 kb on + strand at 132.406 kb on + strand at 132.407 kb on - strand at 132.424 kb on + strand at 132.443 kb on + strand at 132.443 kb on + strand at 132.444 kb on - strand at 132.444 kb on - strand at 132.444 kb on - strand at 132.444 kb on - strand at 132.502 kb on - strand at 132.502 kb on - strand at 132.502 kb on - strand at 132.502 kb on - strand at 132.572 kb on + strand at 132.572 kb on + strand at 132.572 kb on + strand at 132.573 kb on - strand at 132.583 kb on + strand at 132.584 kb on - strand at 132.584 kb on - strand at 132.584 kb on - strand at 132.671 kb on + strand, within PP_0127 at 132.671 kb on + strand, within PP_0127 at 132.672 kb on - strand, within PP_0127 at 132.672 kb on - strand, within PP_0127 at 132.672 kb on - strand, within PP_0127 at 132.740 kb on + strand, within PP_0127 at 133.080 kb on - strand, within PP_0127 at 133.080 kb on - strand, within PP_0127 at 133.096 kb on - strand, within PP_0127 at 133.122 kb on - strand, within PP_0127 at 133.208 kb on + strand at 133.208 kb on + strand at 133.208 kb on + strand at 133.240 kb on + strand at 133.240 kb on + strand at 133.240 kb on + strand at 133.240 kb on + strand at 133.240 kb on + strand at 133.241 kb on - strand at 133.387 kb on + strand, within PP_0128 at 133.387 kb on + strand, within PP_0128 at 133.388 kb on - strand, within PP_0128 at 133.511 kb on + strand, within PP_0128 at 133.512 kb on - strand, within PP_0128 at 133.562 kb on + strand, within PP_0128 at 133.562 kb on + strand, within PP_0128 at 133.563 kb on - strand, within PP_0128 at 133.720 kb on - strand, within PP_0128 at 133.775 kb on + strand, within PP_0128 at 133.775 kb on + strand, within PP_0128 at 133.775 kb on + strand, within PP_0128 at 133.776 kb on - strand, within PP_0128 at 133.777 kb on + strand, within PP_0128 at 133.778 kb on - strand, within PP_0128 at 133.800 kb on - strand, within PP_0128 at 133.942 kb on + strand, within PP_0128 at 133.942 kb on + strand, within PP_0128 at 133.943 kb on - strand, within PP_0128 at 133.943 kb on - strand, within PP_0128 at 133.943 kb on - strand, within PP_0128 at 133.943 kb on - strand, within PP_0128 at 134.056 kb on + strand at 134.056 kb on + strand at 134.056 kb on + strand at 134.075 kb on + strand at 134.076 kb on - strand at 134.076 kb on - strand at 134.139 kb on - strand at 134.143 kb on + strand at 134.143 kb on + strand at 134.449 kb on + strand, within PP_0129 at 134.688 kb on + strand, within PP_0129 at 134.688 kb on + strand, within PP_0129 at 134.689 kb on - strand, within PP_0129 at 134.689 kb on - strand, within PP_0129 at 134.742 kb on + strand, within PP_0129 at 134.743 kb on - strand, within PP_0129 at 134.932 kb on - strand, within PP_0129 at 134.932 kb on - strand, within PP_0129 at 134.969 kb on + strand, within PP_0129 at 134.969 kb on + strand, within PP_0129 at 134.969 kb on + strand, within PP_0129 at 134.970 kb on - strand at 134.970 kb on - strand, within PP_0129 at 134.970 kb on - strand, within PP_0129 at 134.981 kb on + strand, within PP_0129 at 134.981 kb on + strand, within PP_0129 at 134.982 kb on - strand, within PP_0129 at 134.999 kb on + strand, within PP_0129 at 135.000 kb on - strand, within PP_0129 at 135.000 kb on - strand, within PP_0129 at 135.000 kb on - strand, within PP_0129
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 132,286 + PP_0126 0.77 -2.6 132,406 + -1.2 132,406 + -0.2 132,407 - +1.7 132,424 + +3.0 132,443 + +2.4 132,443 + +1.3 132,444 - -0.1 132,444 - +1.4 132,444 - +1.3 132,444 - +2.8 132,502 - -0.1 132,502 - -3.5 132,502 - -2.8 132,502 - -0.2 132,572 + +0.2 132,572 + +0.0 132,572 + -0.3 132,573 - -1.2 132,583 + -3.4 132,584 - -3.7 132,584 - -4.2 132,584 - -2.7 132,671 + PP_0127 0.15 -3.8 132,671 + PP_0127 0.15 -4.2 132,672 - PP_0127 0.15 -2.8 132,672 - PP_0127 0.15 -4.1 132,672 - PP_0127 0.15 -3.9 132,740 + PP_0127 0.26 -3.3 133,080 - PP_0127 0.79 -4.8 133,080 - PP_0127 0.79 -4.2 133,096 - PP_0127 0.82 -4.3 133,122 - PP_0127 0.86 -3.8 133,208 + +1.4 133,208 + +1.5 133,208 + +0.5 133,240 + +1.3 133,240 + -0.2 133,240 + +1.5 133,240 + -0.8 133,240 + +2.8 133,241 - -0.7 133,387 + PP_0128 0.19 +0.1 133,387 + PP_0128 0.19 +1.1 133,388 - PP_0128 0.19 +1.1 133,511 + PP_0128 0.34 -0.7 133,512 - PP_0128 0.34 +0.8 133,562 + PP_0128 0.40 +2.7 133,562 + PP_0128 0.40 +1.4 133,563 - PP_0128 0.40 +0.6 133,720 - PP_0128 0.58 +2.2 133,775 + PP_0128 0.65 +2.4 133,775 + PP_0128 0.65 +1.8 133,775 + PP_0128 0.65 +0.2 133,776 - PP_0128 0.65 +1.2 133,777 + PP_0128 0.65 -0.0 133,778 - PP_0128 0.65 -0.4 133,800 - PP_0128 0.67 +3.7 133,942 + PP_0128 0.84 +0.1 133,942 + PP_0128 0.84 +0.8 133,943 - PP_0128 0.84 +1.7 133,943 - PP_0128 0.84 -0.1 133,943 - PP_0128 0.84 +1.5 133,943 - PP_0128 0.84 +1.6 134,056 + -0.7 134,056 + -1.6 134,056 + +0.4 134,075 + +0.8 134,076 - -0.0 134,076 - -1.4 134,139 - +1.1 134,143 + -1.0 134,143 + +0.8 134,449 + PP_0129 0.18 +0.6 134,688 + PP_0129 0.30 -0.3 134,688 + PP_0129 0.30 -1.2 134,689 - PP_0129 0.30 -0.3 134,689 - PP_0129 0.30 -1.2 134,742 + PP_0129 0.33 +1.0 134,743 - PP_0129 0.33 -0.3 134,932 - PP_0129 0.43 -0.2 134,932 - PP_0129 0.43 -1.1 134,969 + PP_0129 0.45 -0.1 134,969 + PP_0129 0.45 -0.5 134,969 + PP_0129 0.45 -1.5 134,970 - +0.5 134,970 - PP_0129 0.45 +0.1 134,970 - PP_0129 0.45 -0.1 134,981 + PP_0129 0.45 -0.1 134,981 + PP_0129 0.45 -0.2 134,982 - PP_0129 0.45 -2.4 134,999 + PP_0129 0.46 +0.2 135,000 - PP_0129 0.46 +1.5 135,000 - PP_0129 0.46 +1.1 135,000 - PP_0129 0.46 +0.2
Or see this region's nucleotide sequence