Strain Fitness in Pseudomonas putida KT2440 around PP_0116

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
121,324	+		PP_0115	0.59	-0.2
121,324	+		PP_0115	0.59	+0.6
121,325	-		PP_0115	0.59	-0.2
121,399	+		PP_0115	0.63	-0.1
121,399	+		PP_0115	0.63	+0.5
121,400	-		PP_0115	0.63	-0.1
121,400	-		PP_0115	0.63	+0.9
121,411	-		PP_0115	0.63	-0.3
121,485	+		PP_0115	0.67	-0.7
121,485	+		PP_0115	0.67	+1.3
121,486	-		PP_0115	0.67	+0.6
121,486	-		PP_0115	0.67	-1.5
121,525	+		PP_0115	0.69	-1.3
121,525	+		PP_0115	0.69	+1.5
121,525	+		PP_0115	0.69	+0.1
121,525	+		PP_0115	0.69	+0.4
121,525	+		PP_0115	0.69	+0.2
121,526	-		PP_0115	0.69	-0.1
121,526	-		PP_0115	0.69	+0.3
121,561	-		PP_0115	0.71	+1.3
121,561	-		PP_0115	0.71	-0.6
121,962	+		PP_0115	0.89	+0.4
121,962	+		PP_0115	0.89	+0.6
121,963	-		PP_0115	0.89	-0.4
122,014	+				+0.5
122,014	+				+2.4
122,014	+				-0.0
122,015	-				+2.3
122,015	-				-0.7
122,015	-				+0.4
122,015	-				-0.3
122,015	-				+1.8
122,225	+				+0.7
122,225	+				+1.4
122,225	+				-0.2
122,237	+				-0.5
122,252	+				+2.3
122,253	-				-3.3
122,404	+		PP_0116	0.22	+1.0
122,421	-		PP_0116	0.24	+1.6
122,421	-		PP_0116	0.24	-0.0
122,499	+		PP_0116	0.35	+5.5
122,500	-		PP_0116	0.35	-1.5
122,707	-		PP_0116	0.64	+0.5
122,707	-		PP_0116	0.64	-0.2
122,717	+		PP_0116	0.66	-1.4
122,718	-		PP_0116	0.66	+1.0
122,718	-		PP_0116	0.66	+1.3
122,718	-		PP_0116	0.66	-2.3
122,741	+		PP_0116	0.69	-3.2
122,741	+		PP_0116	0.69	+1.5
122,973	-				+0.1
122,997	+				-2.3
122,998	-				-3.4
122,998	-				-1.4
123,030	+				+0.9
123,030	+				-0.8
123,031	-				+1.2
123,118	+				-3.5
123,118	+				-2.0
123,119	-				-1.9
123,119	-				-2.3
123,291	+		PP_0117	0.26	-2.1
123,292	-		PP_0117	0.26	-1.5
123,331	+		PP_0117	0.31	-3.4
123,331	+		PP_0117	0.31	+0.3
123,527	+		PP_0117	0.56	-3.3
123,527	+		PP_0117	0.56	-0.6
123,527	+		PP_0117	0.56	-1.8
123,527	+		PP_0117	0.56	-1.8
123,527	+		PP_0117	0.56	-2.0
123,528	-		PP_0117	0.57	-3.6
123,528	-		PP_0117	0.57	-1.2
123,788	-		PP_0117	0.90	-3.5
123,788	-		PP_0117	0.90	-2.5
123,951	+		PP_0118	0.12	-1.1
123,951	+		PP_0118	0.12	-2.4
123,951	+		PP_0118	0.12	-1.8
123,951	+		PP_0118	0.12	-1.7
123,952	-		PP_0118	0.12	+0.4
123,952	-		PP_0118	0.12	-1.2
123,952	-		PP_0118	0.12	-0.9
123,952	-		PP_0118	0.12	+0.5
123,952	-		PP_0118	0.12	+0.5