Strain Fitness in Pseudomonas putida KT2440 around PP_5444

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0372 and PP_0373 are separated by 147 nucleotidesPP_0373 and PP_5444 are separated by 64 nucleotidesPP_5444 and PP_0375 are separated by 155 nucleotides PP_0372: PP_0372 - Acetylornithine aminotransferase 2, at 452,083 to 453,363 _0372 PP_0373: PP_0373 - conserved membrane protein of unknown function, at 453,511 to 453,669 _0373 PP_5444: PP_5444 - protein of unknown function, at 453,734 to 454,660 _5444 PP_0375: PP_0375 - Prolyl oligopeptidase family protein, at 454,816 to 456,654 _0375 Position (kb) 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 452.860 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372at 453.113 kb on - strand, within PP_0372at 453.147 kb on - strand, within PP_0372at 453.240 kb on - strandat 453.240 kb on - strandat 453.240 kb on - strandat 453.240 kb on - strandat 453.477 kb on + strandat 453.478 kb on - strandat 453.478 kb on - strandat 453.478 kb on - strandat 453.489 kb on + strandat 453.489 kb on + strandat 453.519 kb on + strandat 453.597 kb on + strand, within PP_0373at 453.597 kb on + strand, within PP_0373at 453.597 kb on + strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.601 kb on - strand, within PP_0373at 453.622 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.651 kb on + strand, within PP_0373at 453.651 kb on + strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.735 kb on + strandat 453.750 kb on - strandat 453.769 kb on - strandat 453.804 kb on + strandat 453.822 kb on + strandat 453.822 kb on + strandat 453.860 kb on - strand, within PP_5444at 453.860 kb on - strand, within PP_5444at 453.950 kb on - strand, within PP_5444at 454.065 kb on + strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.114 kb on - strand, within PP_5444at 454.152 kb on + strand, within PP_5444at 454.152 kb on + strandat 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.210 kb on - strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.258 kb on + strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.388 kb on + strand, within PP_5444at 454.388 kb on + strand, within PP_5444at 454.574 kb on + strandat 454.574 kb on + strandat 454.575 kb on - strandat 454.679 kb on + strandat 454.768 kb on - strandat 454.925 kb on + strandat 454.925 kb on + strandat 454.925 kb on + strandat 454.926 kb on - strandat 454.926 kb on - strandat 454.926 kb on - strandat 454.999 kb on + strandat 455.000 kb on - strand, within PP_0375at 455.000 kb on - strand, within PP_0375at 455.000 kb on - strand, within PP_0375at 455.000 kb on - strand, within PP_0375at 455.046 kb on + strand, within PP_0375at 455.046 kb on + strand, within PP_0375at 455.046 kb on + strand, within PP_0375at 455.047 kb on - strand, within PP_0375at 455.047 kb on - strand, within PP_0375at 455.047 kb on - strand, within PP_0375at 455.123 kb on + strand, within PP_0375at 455.124 kb on - strand, within PP_0375at 455.124 kb on - strand, within PP_0375at 455.237 kb on + strand, within PP_0375at 455.238 kb on - strand, within PP_0375at 455.238 kb on - strand, within PP_0375at 455.238 kb on - strand, within PP_0375at 455.250 kb on + strand, within PP_0375at 455.303 kb on + strand, within PP_0375at 455.304 kb on - strand, within PP_0375at 455.370 kb on - strand, within PP_0375at 455.438 kb on + strand, within PP_0375at 455.466 kb on - strand, within PP_0375at 455.614 kb on + strand, within PP_0375at 455.641 kb on + strand, within PP_0375at 455.641 kb on + strand, within PP_0375at 455.642 kb on - strand, within PP_0375

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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452,860 + PP_0372 0.61 -0.0
452,860 + PP_0372 0.61 +0.4
453,113 - PP_0372 0.80 +0.7
453,147 - PP_0372 0.83 +0.6
453,240 - +0.8
453,240 - +2.4
453,240 - +1.1
453,240 - +0.9
453,477 + +0.9
453,478 - -0.3
453,478 - -0.9
453,478 - +0.2
453,489 + -2.9
453,489 + -1.0
453,519 + -0.4
453,597 + PP_0373 0.54 +0.9
453,597 + PP_0373 0.54 -0.6
453,597 + PP_0373 0.54 -1.1
453,598 - PP_0373 0.55 +1.0
453,598 - PP_0373 0.55 +0.5
453,598 - PP_0373 0.55 -0.8
453,598 - PP_0373 0.55 -1.7
453,601 - PP_0373 0.57 +0.5
453,622 + PP_0373 0.70 -2.5
453,649 + PP_0373 0.87 -0.7
453,649 + PP_0373 0.87 +1.0
453,649 + PP_0373 0.87 +0.5
453,650 - PP_0373 0.87 +0.2
453,650 - PP_0373 0.87 -0.6
453,650 - PP_0373 0.87 -0.2
453,650 - PP_0373 0.87 +0.5
453,650 - PP_0373 0.87 +0.7
453,650 - PP_0373 0.87 +0.5
453,651 + PP_0373 0.88 +1.4
453,651 + PP_0373 0.88 -1.1
453,652 - PP_0373 0.89 +0.7
453,652 - PP_0373 0.89 -0.2
453,652 - PP_0373 0.89 +0.8
453,735 + +0.8
453,750 - -0.6
453,769 - +0.7
453,804 + -0.2
453,822 + +0.4
453,822 + +1.3
453,860 - PP_5444 0.14 -0.9
453,860 - PP_5444 0.14 +1.7
453,950 - PP_5444 0.23 +0.7
454,065 + PP_5444 0.36 -1.2
454,066 - PP_5444 0.36 +0.6
454,066 - PP_5444 0.36 -0.0
454,066 - PP_5444 0.36 +0.8
454,066 - PP_5444 0.36 +1.2
454,066 - PP_5444 0.36 +1.0
454,066 - PP_5444 0.36 +0.2
454,114 - PP_5444 0.41 -0.8
454,152 + PP_5444 0.45 +1.8
454,152 + -1.1
454,153 - PP_5444 0.45 +1.0
454,153 - PP_5444 0.45 +0.4
454,153 - PP_5444 0.45 -1.8
454,210 - PP_5444 0.51 +1.3
454,236 + PP_5444 0.54 -0.1
454,236 + PP_5444 0.54 -0.2
454,258 + PP_5444 0.57 +1.0
454,292 - PP_5444 0.60 +0.2
454,292 - PP_5444 0.60 +0.9
454,340 - PP_5444 0.65 -0.0
454,340 - PP_5444 0.65 +0.3
454,388 + PP_5444 0.71 +1.5
454,388 + PP_5444 0.71 -1.1
454,574 + -1.0
454,574 + +2.0
454,575 - -0.1
454,679 + +0.7
454,768 - -0.7
454,925 + -0.7
454,925 + -0.8
454,925 + -1.9
454,926 - -1.4
454,926 - +0.2
454,926 - -0.6
454,999 + -0.7
455,000 - PP_0375 0.10 -0.1
455,000 - PP_0375 0.10 +0.3
455,000 - PP_0375 0.10 -0.3
455,000 - PP_0375 0.10 -0.1
455,046 + PP_0375 0.13 +2.5
455,046 + PP_0375 0.13 -1.1
455,046 + PP_0375 0.13 -2.2
455,047 - PP_0375 0.13 +0.4
455,047 - PP_0375 0.13 +0.8
455,047 - PP_0375 0.13 -0.2
455,123 + PP_0375 0.17 -0.1
455,124 - PP_0375 0.17 -0.7
455,124 - PP_0375 0.17 +0.2
455,237 + PP_0375 0.23 -0.3
455,238 - PP_0375 0.23 -1.9
455,238 - PP_0375 0.23 +0.7
455,238 - PP_0375 0.23 +1.5
455,250 + PP_0375 0.24 +1.9
455,303 + PP_0375 0.26 +0.7
455,304 - PP_0375 0.27 +0.9
455,370 - PP_0375 0.30 -0.2
455,438 + PP_0375 0.34 -0.3
455,466 - PP_0375 0.35 +0.3
455,614 + PP_0375 0.43 +0.7
455,641 + PP_0375 0.45 -0.1
455,641 + PP_0375 0.45 -0.2
455,642 - PP_0375 0.45 +1.0

Or see this region's nucleotide sequence