Strain Fitness in Pseudomonas putida KT2440 around PP_5243

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,983,536	-		PP_5242	0.83	-0.0
5,983,623	+		PP_5242	0.85	+1.1
5,983,624	-		PP_5242	0.85	+0.4
5,983,641	-		PP_5242	0.85	-0.9
5,984,110	+				+0.5
5,984,164	+				-0.3
5,984,248	-				-0.4
5,984,263	+				+0.8
5,984,263	+				-0.4
5,984,264	-				+0.9
5,984,305	+				-0.6
5,984,305	+				-1.5
5,984,306	-				+0.2
5,984,403	-				-0.7
5,984,403	-				+0.5
5,984,439	+				+0.9
5,984,451	+				-0.8
5,984,481	+				-0.2
5,984,481	+				+0.1
5,984,482	-				-0.4
5,984,482	-				-0.2
5,984,489	+				-1.0
5,984,489	+				+0.4
5,984,490	-				+0.2
5,984,515	+				+0.2
5,984,516	-				-2.1
5,984,658	+		PP_5243	0.26	-2.1
5,984,658	+		PP_5243	0.26	+0.2
5,984,875	+		PP_5243	0.61	+0.5
5,984,875	+		PP_5243	0.61	+0.1
5,984,876	-		PP_5243	0.61	-1.4
5,985,103	+				-0.3
5,985,103	+				+1.1
5,985,103	+				-0.6
5,985,171	+				+1.0
5,985,171	+				-0.1
5,985,182	-				-0.8
5,985,193	-				-1.6
5,985,308	-		PP_5244	0.29	-0.1
5,985,308	-		PP_5244	0.29	-0.6
5,985,463	+		PP_5244	0.67	-0.2
5,985,463	+		PP_5244	0.67	-0.8
5,985,464	-		PP_5244	0.67	+0.2
5,985,549	+		PP_5244	0.88	-0.5
5,985,549	+		PP_5244	0.88	+0.8
5,985,549	+		PP_5244	0.88	-0.6
5,985,550	-		PP_5244	0.89	+1.0
5,985,630	+				+0.7
5,985,631	-				+0.6
5,985,670	+				-0.1
5,985,671	-				+0.3
5,985,671	-				+0.3
5,985,671	-				+0.9
5,985,671	-				+0.8
5,985,684	+				+0.3
5,985,733	+				-1.7
5,985,733	+				+0.2
5,985,733	+				+1.4
5,985,734	-				+0.6
5,985,734	-				+0.4
5,985,734	-				-0.5
5,985,789	+				+0.8
5,985,790	-				-1.3
5,985,898	-		PP_5245	0.17	-1.2
5,985,921	+		PP_5245	0.19	-0.9
5,985,921	+		PP_5245	0.19	-2.0
5,985,995	+		PP_5245	0.26	+0.3
5,985,996	-		PP_5245	0.27	-0.7