Strain Fitness in Pseudomonas putida KT2440 around PP_5096

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,818,746	+				-0.4
5,818,746	+				+0.3
5,818,746	+				-2.1
5,818,747	-				-1.5
5,818,747	-				+0.2
5,818,747	-				-1.2
5,818,747	-				-2.5
5,818,747	-				-0.6
5,818,747	-				-1.9
5,818,968	-		PP_5095	0.29	-1.6
5,819,128	+		PP_5095	0.48	-1.5
5,819,129	-		PP_5095	0.48	-1.2
5,819,190	-		PP_5095	0.56	-0.6
5,819,548	+				-0.8
5,819,548	+				-0.4
5,819,549	-				-1.1
5,819,558	+				+0.3
5,819,558	+				-0.9
5,819,558	+				-3.5
5,819,558	+				-1.3
5,819,558	+				+0.0
5,819,558	+				-1.5
5,819,559	-				+0.6
5,819,559	-				-1.0
5,819,669	+		PP_5096	0.18	-0.6
5,819,669	+		PP_5096	0.18	-2.6
5,819,670	-		PP_5096	0.18	-0.5
5,819,670	-		PP_5096	0.18	-1.9
5,819,670	-		PP_5096	0.18	-0.5
5,819,740	+		PP_5096	0.30	-3.0
5,819,825	+		PP_5096	0.45	-3.0
5,819,825	+		PP_5096	0.45	-0.0
5,819,826	-		PP_5096	0.45	-1.1
5,819,826	-		PP_5096	0.45	-1.9
5,819,826	-		PP_5096	0.45	-1.6
5,819,826	-		PP_5096	0.45	-3.6
5,819,830	+		PP_5096	0.46	-1.6
5,819,830	+		PP_5096	0.46	-0.7
5,819,831	-		PP_5096	0.46	-2.2
5,819,831	-		PP_5096	0.46	-1.7
5,820,216	+				+0.9
5,820,222	+				+0.9
5,820,222	+				+0.3
5,820,222	+				+0.4
5,820,222	+				-0.2
5,820,223	-				-1.2
5,820,289	-				-0.8
5,820,354	-				+0.2
5,820,366	-		PP_5097	0.10	+1.1
5,820,374	+		PP_5097	0.11	-0.0
5,820,374	+		PP_5097	0.11	+0.4
5,820,374	+		PP_5097	0.11	+0.6
5,820,374	+		PP_5097	0.11	-0.6
5,820,374	+		PP_5097	0.11	-1.0
5,820,374	+		PP_5097	0.11	+0.1
5,820,375	-		PP_5097	0.11	+0.1
5,820,375	-		PP_5097	0.11	+0.2
5,820,375	-		PP_5097	0.11	-2.3
5,820,375	-		PP_5097	0.11	-0.2
5,820,375	-		PP_5097	0.11	+0.2
5,820,375	-		PP_5097	0.11	-0.2
5,820,375	-		PP_5097	0.11	+0.8
5,820,452	+		PP_5097	0.18	-2.8
5,820,615	-		PP_5097	0.32	-0.6
5,820,634	-		PP_5097	0.34	-0.7
5,820,643	-		PP_5097	0.34	-0.5
5,820,759	-		PP_5097	0.45	-0.3
5,820,946	+		PP_5097	0.61	+0.1
5,820,946	+		PP_5097	0.61	+0.5
5,820,946	+		PP_5097	0.61	-0.7
5,820,946	+		PP_5097	0.61	-0.6
5,820,946	+		PP_5097	0.61	+0.5
5,820,947	-		PP_5097	0.61	+0.8
5,820,947	-		PP_5097	0.61	-1.2
5,820,947	-		PP_5097	0.61	+0.9
5,820,947	-		PP_5097	0.61	-1.3
5,820,947	-		PP_5097	0.61	-0.1
5,820,947	-		PP_5097	0.61	+1.5
5,820,947	-		PP_5097	0.61	-0.2
5,820,947	-		PP_5097	0.61	-0.1
5,820,947	-		PP_5097	0.61	-1.0
5,820,947	-		PP_5097	0.61	-0.1
5,820,947	-		PP_5097	0.61	+0.6
5,820,947	-		PP_5097	0.61	-1.5
5,820,947	-		PP_5097	0.61	+0.6
5,820,950	+		PP_5097	0.61	+0.9
5,820,950	+		PP_5097	0.61	-0.0
5,820,951	-		PP_5097	0.61	+0.2
5,821,014	-		PP_5097	0.67	-0.5
5,821,049	+		PP_5097	0.70	-0.6
5,821,049	+		PP_5097	0.70	+0.8
5,821,049	+		PP_5097	0.70	+0.6
5,821,100	+		PP_5097	0.74	+0.2
5,821,100	+		PP_5097	0.74	+2.4
5,821,101	-		PP_5097	0.75	+1.6
5,821,127	+		PP_5097	0.77	+1.4
5,821,127	+		PP_5097	0.77	+1.1