Strain Fitness in Pseudomonas putida KT2440 around PP_4941

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,621,416	-				-0.8
5,621,416	-				+0.3
5,621,416	-				+1.3
5,621,543	+		PP_4940	0.22	-0.5
5,621,543	+		PP_4940	0.22	-0.5
5,621,657	+		PP_4940	0.34	+0.1
5,621,657	+		PP_4940	0.34	-0.6
5,621,658	-		PP_4940	0.34	-0.0
5,621,658	-		PP_4940	0.34	+2.0
5,621,658	-		PP_4940	0.34	-1.0
5,621,698	-		PP_4940	0.39	+0.4
5,621,703	+		PP_4940	0.39	+0.1
5,621,703	+		PP_4940	0.39	+1.1
5,621,718	-		PP_4940	0.41	-0.8
5,621,718	-		PP_4940	0.41	-0.7
5,621,718	-		PP_4940	0.41	+0.4
5,621,798	+		PP_4940	0.49	-1.7
5,621,799	-		PP_4940	0.49	-0.5
5,621,799	-		PP_4940	0.49	+0.1
5,621,879	+		PP_4940	0.57	+2.3
5,621,879	+		PP_4940	0.57	+0.2
5,621,879	+		PP_4940	0.57	-0.4
5,621,880	-		PP_4940	0.58	-0.3
5,621,880	-				+0.3
5,621,940	-		PP_4940	0.64	-0.9
5,622,003	-		PP_4940	0.70	-1.4
5,622,003	-		PP_4940	0.70	-0.3
5,622,003	-				+0.8
5,622,017	+		PP_4940	0.72	+0.7
5,622,018	-		PP_4940	0.72	-1.9
5,622,018	-		PP_4940	0.72	+0.2
5,622,018	-		PP_4940	0.72	+3.1
5,622,125	+		PP_4940	0.83	+1.0
5,622,156	-		PP_4940	0.86	-0.8
5,622,230	+				-0.3
5,622,230	+				-2.3
5,622,230	+				-0.4
5,622,275	-				+1.0
5,622,335	+				+0.9
5,622,335	+				+2.1
5,622,335	+				+1.0
5,622,335	+				+0.9
5,622,336	-				-0.4
5,622,336	-				-1.7
5,622,336	-				+1.1
5,622,627	+		PP_4941	0.21	-0.8
5,622,647	+		PP_4941	0.22	-2.2
5,622,648	-		PP_4941	0.22	-2.0
5,622,717	+		PP_4941	0.27	-1.2
5,622,718	-		PP_4941	0.27	-0.2
5,622,718	-		PP_4941	0.27	-1.8
5,622,736	+		PP_4941	0.29	-2.8
5,622,736	+		PP_4941	0.29	-2.6
5,622,967	+		PP_4941	0.45	-0.1
5,622,968	-		PP_4941	0.45	-0.5
5,622,968	-		PP_4941	0.45	-0.1
5,623,080	-		PP_4941	0.53	-0.5
5,623,093	+		PP_4941	0.54	-1.6
5,623,094	-		PP_4941	0.54	-2.2
5,623,142	+		PP_4941	0.58	-1.1
5,623,143	-		PP_4941	0.58	-1.6
5,623,151	+		PP_4941	0.58	-1.8
5,623,152	-		PP_4941	0.58	-3.3
5,623,152	-		PP_4941	0.58	-3.3
5,623,539	-		PP_4941	0.86	-3.0
5,623,544	+		PP_4941	0.86	-1.8
5,623,544	+		PP_4941	0.86	-1.6
5,623,544	+		PP_4941	0.86	-2.1
5,623,544	+		PP_4941	0.86	-2.4
5,623,544	+		PP_4941	0.86	-2.6
5,623,545	-		PP_4941	0.86	-1.1
5,623,545	-		PP_4941	0.86	-3.5
5,623,562	+		PP_4941	0.87	+0.1
5,623,562	+		PP_4941	0.87	-3.3
5,623,563	-		PP_4941	0.88	-2.7
5,623,563	-		PP_4941	0.88	-1.9
5,623,563	-		PP_4941	0.88	-0.3
5,623,563	-		PP_4941	0.88	-2.6
5,623,563	-		PP_4941	0.88	-1.6
5,623,563	-		PP_4941	0.88	-0.4
5,623,745	-				+0.2
5,623,745	-				+2.8
5,623,775	+				-2.8
5,623,775	+				-1.4
5,623,776	-				-2.3
5,623,776	-				-1.9
5,623,777	+				-1.2
5,623,777	+				-3.7
5,623,921	+		PP_4942	0.21	-0.3
5,624,046	-		PP_4942	0.35	-0.2
5,624,098	+		PP_4942	0.41	-0.5
5,624,098	+		PP_4942	0.41	-2.8
5,624,098	+		PP_4942	0.41	-3.8
5,624,099	-		PP_4942	0.41	-1.5
5,624,142	+		PP_4942	0.45	-1.1
5,624,585	+				-1.9
5,624,618	+				-2.0