Strain Fitness in Pseudomonas putida KT2440 around PP_4869

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,535,282	-		PP_4868	0.25	+0.9
5,535,388	-		PP_4868	0.33	+0.6
5,535,388	-		PP_4868	0.33	+0.7
5,535,388	-		PP_4868	0.33	+1.0
5,535,388	-		PP_4868	0.33	+1.5
5,535,443	+		PP_4868	0.38	+0.9
5,535,444	-		PP_4868	0.38	+2.4
5,535,631	+		PP_4868	0.54	+1.5
5,535,812	+		PP_4868	0.68	+1.0
5,536,154	+				-0.1
5,536,167	+				+1.9
5,536,167	+				+1.6
5,537,024	+				+0.4
5,537,024	+				-0.9
5,537,025	-				-0.8
5,537,025	-				+1.3
5,537,025	-				-1.2
5,537,025	-				+1.7
5,537,025	-				+1.0
5,537,057	+				+1.1
5,537,127	+				+1.7
5,537,127	+				+1.8
5,537,191	-		PP_4870	0.14	+0.7
5,537,191	-		PP_4870	0.14	+1.2
5,537,301	+		PP_4870	0.39	-1.4
5,537,302	-		PP_4870	0.39	+1.5
5,537,472	+		PP_4870	0.77	+0.2
5,537,473	-		PP_4870	0.77	+0.7
5,537,558	+				-0.9
5,537,599	+				-0.7
5,537,599	+				+0.1
5,537,642	+				-2.3
5,537,643	-				-1.4
5,537,697	+				+0.6
5,537,697	+				+0.9
5,537,765	+				-0.3
5,537,765	+				+0.3
5,537,795	-				-2.4
5,537,931	-				+0.2
5,537,981	-				-1.5