Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4782 and PP_4783 are separated by 13 nucleotides PP_4783 and PP_4784 are separated by 16 nucleotides PP_4784 and PP_4785 are separated by 244 nucleotides PP_4785 and PP_4786 are separated by 3 nucleotides
PP_4782: PP_4782 - Phosphomethylpyrimidine kinase, at 5,445,045 to 5,445,842
_4782
PP_4783: PP_4783 - Thiamine-phosphate synthase, at 5,445,856 to 5,446,479
_4783
PP_4784: PP_4784 - Glutamate-1-semialdehyde 2,1-aminomutase, at 5,446,496 to 5,447,779
_4784
PP_4785: PP_4785 - conserved exported protein of unknown function, at 5,448,024 to 5,448,569
_4785
PP_4786: PP_4786 - conserved protein of unknown function, at 5,448,573 to 5,448,899
_4786
Position (kb) 5446
5447
5448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5445.610 kb on - strand, within PP_4782 at 5445.663 kb on + strand, within PP_4782 at 5445.663 kb on + strand, within PP_4782 at 5445.663 kb on + strand, within PP_4782 at 5445.664 kb on - strand, within PP_4782 at 5445.756 kb on + strand, within PP_4782 at 5445.756 kb on + strand, within PP_4782 at 5445.804 kb on + strand at 5445.804 kb on + strand at 5445.843 kb on + strand at 5445.874 kb on + strand at 5446.222 kb on + strand, within PP_4783 at 5446.489 kb on + strand at 5447.821 kb on + strand at 5447.822 kb on - strand at 5447.822 kb on - strand at 5447.848 kb on + strand at 5447.848 kb on + strand at 5447.849 kb on - strand at 5447.887 kb on + strand at 5447.887 kb on + strand at 5447.888 kb on - strand at 5447.892 kb on - strand at 5447.892 kb on - strand at 5447.948 kb on + strand at 5447.949 kb on - strand at 5447.949 kb on - strand at 5447.949 kb on - strand at 5447.965 kb on - strand at 5447.972 kb on - strand at 5447.972 kb on - strand at 5448.011 kb on + strand at 5448.234 kb on + strand, within PP_4785 at 5448.234 kb on + strand, within PP_4785 at 5448.235 kb on - strand, within PP_4785 at 5448.235 kb on - strand, within PP_4785 at 5448.237 kb on + strand, within PP_4785 at 5448.237 kb on + strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.240 kb on + strand, within PP_4785 at 5448.240 kb on + strand, within PP_4785 at 5448.241 kb on - strand, within PP_4785 at 5448.382 kb on - strand, within PP_4785 at 5448.382 kb on - strand, within PP_4785 at 5448.513 kb on + strand, within PP_4785 at 5448.514 kb on - strand, within PP_4785 at 5448.679 kb on - strand, within PP_4786
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,445,610 - PP_4782 0.71 +0.4 5,445,663 + PP_4782 0.77 +1.1 5,445,663 + PP_4782 0.77 +0.8 5,445,663 + PP_4782 0.77 -0.9 5,445,664 - PP_4782 0.78 -0.7 5,445,756 + PP_4782 0.89 +0.7 5,445,756 + PP_4782 0.89 +0.8 5,445,804 + -0.7 5,445,804 + -0.5 5,445,843 + +1.1 5,445,874 + -0.1 5,446,222 + PP_4783 0.59 +1.0 5,446,489 + +1.7 5,447,821 + -0.0 5,447,822 - -3.0 5,447,822 - -3.3 5,447,848 + -0.4 5,447,848 + +1.3 5,447,849 - -1.5 5,447,887 + +0.6 5,447,887 + +1.6 5,447,888 - -3.0 5,447,892 - -3.7 5,447,892 - -2.5 5,447,948 + +0.6 5,447,949 - -3.2 5,447,949 - -3.6 5,447,949 - -1.7 5,447,965 - -2.4 5,447,972 - -3.7 5,447,972 - -2.3 5,448,011 + -2.8 5,448,234 + PP_4785 0.38 -2.2 5,448,234 + PP_4785 0.38 -4.0 5,448,235 - PP_4785 0.39 -2.3 5,448,235 - PP_4785 0.39 -3.2 5,448,237 + PP_4785 0.39 -1.5 5,448,237 + PP_4785 0.39 -4.2 5,448,238 - PP_4785 0.39 -3.6 5,448,238 - PP_4785 0.39 -3.8 5,448,238 - PP_4785 0.39 -2.3 5,448,238 - PP_4785 0.39 -2.4 5,448,238 - PP_4785 0.39 -2.6 5,448,238 - PP_4785 0.39 -1.9 5,448,240 + PP_4785 0.40 -2.5 5,448,240 + PP_4785 0.40 -2.1 5,448,241 - PP_4785 0.40 -2.4 5,448,382 - PP_4785 0.66 -4.5 5,448,382 - PP_4785 0.66 -3.3 5,448,513 + PP_4785 0.90 +0.8 5,448,514 - PP_4785 0.90 +0.3 5,448,679 - PP_4786 0.32 -0.1
Or see this region's nucleotide sequence