Strain Fitness in Pseudomonas putida KT2440 around PP_4687

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,325,569	+				+0.6
5,325,570	-				+0.9
5,325,570	-				-0.1
5,325,570	-				+0.6
5,325,605	+				+0.8
5,325,605	+				+0.1
5,325,605	+				+1.1
5,325,606	-				-0.3
5,325,606	-				-0.6
5,325,606	-				+0.4
5,325,606	-				+0.1
5,325,606	-				+0.7
5,325,606	-				-1.1
5,325,656	-		PP_4686	0.12	+0.1
5,325,656	-		PP_4686	0.12	+0.9
5,325,700	+		PP_4686	0.17	+0.7
5,325,700	+		PP_4686	0.17	+0.1
5,325,701	-		PP_4686	0.17	-0.4
5,325,725	+		PP_4686	0.20	+1.0
5,325,725	+		PP_4686	0.20	+0.0
5,325,725	+		PP_4686	0.20	+0.4
5,325,725	+		PP_4686	0.20	-1.8
5,325,725	+		PP_4686	0.20	-0.1
5,325,725	+		PP_4686	0.20	-0.2
5,325,726	-		PP_4686	0.20	-0.2
5,325,726	-		PP_4686	0.20	-0.8
5,325,726	-		PP_4686	0.20	+0.9
5,326,016	+		PP_4686	0.53	+0.7
5,326,273	+		PP_4686	0.82	-0.3
5,326,273	+		PP_4686	0.82	+0.5
5,326,273	+		PP_4686	0.82	-0.2
5,326,273	+		PP_4686	0.82	-0.1
5,326,274	-		PP_4686	0.82	+0.1
5,326,274	-		PP_4686	0.82	-2.7
5,326,274	-		PP_4686	0.82	-1.7
5,326,274	-		PP_4686	0.82	+0.5
5,326,274	-		PP_4686	0.82	+0.4
5,326,381	+				-0.3
5,326,390	+				-0.6
5,326,439	+				+0.4
5,326,439	+				-0.8
5,326,439	+				-0.8
5,326,440	-				+0.4
5,326,440	-				+0.4
5,326,440	-				+1.0
5,326,460	+				+0.2
5,326,460	+				+0.2
5,326,461	-				+0.6
5,326,461	-				-0.9
5,326,585	+				+1.2
5,326,585	+				-0.8
5,326,585	+				+0.4
5,326,585	+				+0.0
5,326,598	+				+0.3
5,326,598	+				-1.5
5,326,599	-				-0.3
5,326,599	-				-0.1
5,326,599	-				+0.4
5,326,599	-				+0.0
5,326,680	+		PP_4687	0.19	+0.3
5,326,759	+		PP_4687	0.29	-1.4
5,326,760	-		PP_4687	0.29	+0.3
5,326,760	-		PP_4687	0.29	-1.2
5,326,849	+		PP_4687	0.41	-0.7
5,326,849	+		PP_4687	0.41	-0.5
5,326,850	-		PP_4687	0.41	-0.4
5,326,850	-		PP_4687	0.41	-0.5
5,326,911	-		PP_4687	0.49	+0.1
5,327,279	+				+1.1
5,327,279	+				-0.7
5,327,280	-				-0.2
5,327,280	-				+0.3
5,327,280	-				+0.3
5,327,280	-				-0.6
5,327,280	-				-0.9
5,327,280	-				-1.1
5,327,363	+				+1.1
5,327,363	+				+0.2
5,327,505	+		PP_4688	0.20	+1.3
5,327,703	+		PP_4688	0.39	-0.0
5,327,703	+		PP_4688	0.39	+0.7
5,327,722	+				+1.2
5,327,847	+		PP_4688	0.53	+1.3
5,327,847	+		PP_4688	0.53	+0.2
5,327,848	-		PP_4688	0.53	+1.5
5,327,848	-		PP_4688	0.53	-0.5
5,327,848	-		PP_4688	0.53	+0.4
5,327,848	-		PP_4688	0.53	+0.5
5,327,893	+		PP_4688	0.57	+3.3
5,327,908	-		PP_4688	0.58	+0.9
5,327,945	+		PP_4688	0.62	-1.4
5,327,947	+		PP_4688	0.62	-0.3