Strain Fitness in Pseudomonas putida KT2440 around PP_3822

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,349,210	+		PP_3821	0.12	-3.8
4,349,211	-		PP_3821	0.12	-3.5
4,349,211	-		PP_3821	0.12	-2.9
4,349,211	-		PP_3821	0.12	-3.6
4,349,211	-		PP_3821	0.12	-4.7
4,349,211	-		PP_3821	0.12	-2.9
4,349,212	+		PP_3821	0.12	-4.4
4,349,212	+		PP_3821	0.12	-3.0
4,349,212	+		PP_3821	0.12	-4.8
4,349,213	-		PP_3821	0.12	-1.2
4,349,213	-		PP_3821	0.12	-3.3
4,349,213	-		PP_3821	0.12	-3.2
4,349,265	+		PP_3821	0.19	-3.5
4,349,266	-		PP_3821	0.19	-2.5
4,349,266	-		PP_3821	0.19	-2.9
4,349,266	-		PP_3821	0.19	-2.9
4,349,329	+		PP_3821	0.26	-3.1
4,349,329	+		PP_3821	0.26	-4.0
4,349,440	+		PP_3821	0.39	-1.6
4,349,440	+		PP_3821	0.39	-4.4
4,349,440	+		PP_3821	0.39	-2.8
4,349,441	-		PP_3821	0.40	-3.2
4,349,441	-		PP_3821	0.40	-3.3
4,349,441	-		PP_3821	0.40	-2.4
4,349,441	-		PP_3821	0.40	-3.1
4,349,441	-		PP_3821	0.40	-1.9
4,349,495	-		PP_3821	0.46	-3.7
4,349,638	+		PP_3821	0.63	-3.4
4,349,653	+		PP_3821	0.65	-2.2
4,349,654	-		PP_3821	0.65	-4.4
4,349,688	-		PP_3821	0.69	-4.0
4,349,699	-		PP_3821	0.70	-4.4
4,349,699	-		PP_3821	0.70	-2.9
4,349,740	+		PP_3821	0.75	-3.5
4,349,740	+		PP_3821	0.75	-2.8
4,349,740	+		PP_3821	0.75	-1.9
4,349,741	-		PP_3821	0.75	-1.4
4,349,837	-		PP_3821	0.87	-4.1
4,349,948	+				-3.1
4,349,948	+				-4.3
4,349,948	+				-3.9
4,349,948	+				-4.6
4,349,948	+				-4.2
4,349,948	+				-4.1
4,349,948	+				-3.3
4,349,948	+				-3.8
4,349,948	+				-3.5
4,349,948	+				-1.1
4,349,948	+				-3.1
4,349,949	-				-0.4
4,349,949	-				-3.6
4,349,949	-				-3.6
4,349,949	-				-0.2
4,349,949	-				-1.8
4,349,950	+				-3.2
4,349,950	+				-4.6
4,349,950	+				-3.4
4,349,950	+				-3.2
4,349,950	+				-3.9
4,349,950	+				-2.4
4,349,950	+				-4.0
4,349,950	+				-4.7
4,349,951	-				-4.7
4,349,951	-				-5.4
4,349,951	-				-3.2
4,349,951	-				-3.9
4,349,951	-				-4.1
4,349,951	-				-4.5
4,349,951	-				-3.8
4,349,958	+				-2.4
4,349,958	+				-2.9
4,349,959	-				+0.5
4,349,969	-				-0.2
4,349,969	-				-0.6
4,349,993	+				-3.9
4,349,993	+				-4.1
4,349,994	-				+0.8
4,350,013	+				-4.4
4,350,013	+				-2.6
4,350,013	+				-3.8
4,350,013	+				-5.3
4,350,013	+				-4.0
4,350,013	+				-5.1
4,350,014	-				-0.3
4,350,014	-				+0.0
4,350,045	+				-2.1
4,350,045	+				-0.5
4,350,045	+				-1.9
4,350,046	-				-0.8
4,350,046	-				+0.5
4,350,046	-				+1.0
4,350,046	-				-0.5
4,350,051	+				-2.6
4,350,052	-				+0.7
4,350,061	+				-2.2
4,350,061	+				-0.9
4,350,061	+				-2.0
4,350,061	+				-1.3
4,350,061	+				-1.9
4,350,062	-				+0.1
4,350,066	-				+0.6
4,350,081	+				-1.0
4,350,081	+				-1.1
4,350,086	-				-0.3
4,350,086	-				+1.2
4,350,096	+				-3.5
4,350,097	-				+0.4
4,350,097	-				-0.3
4,350,097	-				-0.5
4,350,097	-				-0.0
4,350,097	-				+0.0
4,350,191	-				-0.8
4,350,229	+				+1.1
4,350,229	+				+0.3
4,350,229	+				-0.8
4,350,230	-				-0.0
4,350,234	+				+0.4
4,350,234	+				+1.4
4,350,234	+				-0.3
4,350,293	+		PP_3822	0.12	+0.6
4,350,293	+		PP_3822	0.12	-0.8
4,350,397	-		PP_3822	0.23	-2.2
4,350,397	-		PP_3822	0.23	-0.9
4,350,418	+		PP_3822	0.25	+0.9
4,350,450	+		PP_3822	0.29	-2.3
4,350,450	+		PP_3822	0.29	-0.5
4,350,451	-		PP_3822	0.29	+0.2
4,350,479	+		PP_3822	0.32	-0.2
4,350,479	+		PP_3822	0.32	-1.0
4,350,479	+				+3.2
4,350,479	+		PP_3822	0.32	-0.7
4,350,479	+		PP_3822	0.32	-2.8
4,350,479	+		PP_3822	0.32	-0.2
4,350,479	+		PP_3822	0.32	-1.0
4,350,479	+		PP_3822	0.32	-0.1
4,350,480	-		PP_3822	0.32	-0.9
4,350,480	-		PP_3822	0.32	-0.9
4,350,480	-		PP_3822	0.32	-0.9
4,350,480	-		PP_3822	0.32	+0.2
4,350,480	-		PP_3822	0.32	-0.2
4,350,480	-		PP_3822	0.32	+0.2
4,350,480	-		PP_3822	0.32	+0.3
4,350,483	+		PP_3822	0.33	+0.2
4,350,483	+		PP_3822	0.33	-0.4
4,350,483	+		PP_3822	0.33	-0.1
4,350,484	-		PP_3822	0.33	-0.7
4,350,484	-		PP_3822	0.33	+0.1
4,350,655	-		PP_3822	0.51	-0.1
4,350,655	-		PP_3822	0.51	+0.1
4,350,660	+		PP_3822	0.52	-2.6
4,350,660	+		PP_3822	0.52	-0.3
4,350,661	-		PP_3822	0.52	+0.7
4,350,661	-		PP_3822	0.52	+0.4
4,350,789	+		PP_3822	0.66	+0.2
4,350,799	-		PP_3822	0.67	+1.1
4,350,853	+		PP_3822	0.73	+1.3
4,350,854	-		PP_3822	0.73	+0.3
4,350,854	-		PP_3822	0.73	+0.6
4,350,950	-		PP_3822	0.84	-2.3
4,351,250	+		PP_3823	0.24	-0.6
4,351,250	+		PP_3823	0.24	-1.5
4,351,250	+		PP_3823	0.24	+0.3
4,351,356	-		PP_3823	0.40	+0.5
4,351,439	+		PP_3823	0.52	+0.1
4,351,439	+		PP_3823	0.52	+0.2
4,351,440	-		PP_3823	0.53	-1.0
4,351,440	-		PP_3823	0.53	+0.7
4,351,440	-		PP_3823	0.53	-0.5
4,351,444	-		PP_3823	0.53	-0.7
4,351,547	+		PP_3823	0.69	+0.3
4,351,547	+		PP_3823	0.69	-0.3
4,351,887	-		PP_3824	0.17	+0.0
4,352,055	+		PP_3824	0.61	+0.7
4,352,055	+		PP_3824	0.61	+1.3
4,352,056	-		PP_3824	0.61	+0.0