Strain Fitness in Pseudomonas putida KT2440 around PP_3301

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,733,122	+				-2.2
3,733,123	-				-0.4
3,733,153	+				-0.1
3,733,155	+				-0.7
3,733,269	-				-2.1
3,733,318	-				-3.1
3,733,409	-		PP_3300	0.16	-2.8
3,733,414	+		PP_3300	0.17	-3.5
3,733,468	+		PP_3300	0.25	-2.4
3,733,468	+		PP_3300	0.25	-3.1
3,733,474	+		PP_3300	0.26	-2.8
3,733,475	-		PP_3300	0.27	-0.5
3,733,475	-		PP_3300	0.27	-0.7
3,733,601	+		PP_3300	0.47	-1.3
3,733,601	+		PP_3300	0.47	-1.1
3,733,602	-		PP_3300	0.47	-1.2
3,733,658	-		PP_3300	0.56	-1.1
3,733,658	-		PP_3300	0.56	-3.7
3,733,658	-		PP_3300	0.56	-0.6
3,733,664	+		PP_3300	0.57	-2.1
3,733,665	-		PP_3300	0.57	-2.0
3,733,719	+		PP_3300	0.66	-2.2
3,733,719	+		PP_3300	0.66	-2.5
3,733,719	+		PP_3300	0.66	-2.7
3,733,720	-		PP_3300	0.66	-1.9
3,733,725	+		PP_3300	0.67	-3.2
3,733,725	+		PP_3300	0.67	-1.0
3,733,726	-		PP_3300	0.67	-2.5
3,733,726	-		PP_3300	0.67	-1.6
3,733,726	-		PP_3300	0.67	-1.4
3,733,831	+		PP_3300	0.84	-2.3
3,733,832	-		PP_3300	0.85	+0.3
3,733,835	+		PP_3300	0.85	-0.6
3,733,835	+		PP_3300	0.85	-0.6
3,733,836	-		PP_3300	0.85	-0.1
3,733,836	-		PP_3300	0.85	-1.4
3,733,836	-		PP_3300	0.85	-0.5
3,733,924	+				-0.3
3,733,925	-				-0.1
3,733,977	+				+0.6
3,733,978	-				-1.1
3,733,978	-				-2.9
3,733,979	+				-1.0
3,734,026	+				-0.0
3,734,038	+				+0.2
3,734,039	-				-1.4
3,734,125	+		PP_3301	0.11	+0.4
3,734,126	-		PP_3301	0.11	+2.2
3,734,165	-		PP_3301	0.15	+0.2
3,734,323	+		PP_3301	0.29	-0.3
3,734,415	+		PP_3301	0.37	-0.0
3,734,513	-		PP_3301	0.46	+0.0
3,734,593	+		PP_3301	0.53	-0.0
3,734,594	-		PP_3301	0.53	-0.7
3,734,594	-		PP_3301	0.53	+1.0
3,734,632	-		PP_3301	0.57	-0.5
3,734,632	-		PP_3301	0.57	-0.3
3,734,683	+		PP_3301	0.62	+1.2
3,734,773	-		PP_3301	0.70	+0.2
3,734,819	+		PP_3301	0.74	+0.1
3,734,819	+		PP_3301	0.74	+0.6
3,734,819	+		PP_3301	0.74	-0.2
3,734,866	+		PP_3301	0.78	+0.6
3,734,962	+		PP_3301	0.87	+0.2
3,734,962	+		PP_3301	0.87	+1.1
3,734,962	+		PP_3301	0.87	-1.0
3,734,962	+		PP_3301	0.87	-0.7
3,734,963	-		PP_3301	0.87	+0.8
3,734,963	-		PP_3301	0.87	+2.5
3,735,126	+				+1.0
3,735,348	-				+0.5
3,735,546	-		PP_3302	0.14	-0.1