Strain Fitness in Pseudomonas putida KT2440 around PP_3271

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,705,103	-		PP_3270	0.56	-0.4
3,705,128	+		PP_3270	0.57	-0.1
3,705,129	-		PP_3270	0.58	-0.3
3,705,160	+		PP_3270	0.59	-0.2
3,705,160	+		PP_3270	0.59	-0.9
3,705,160	+		PP_3270	0.59	-0.4
3,705,160	+		PP_3270	0.59	+0.5
3,705,161	-		PP_3270	0.59	+0.5
3,705,414	+		PP_3270	0.71	-0.4
3,705,414	+		PP_3270	0.71	-0.4
3,705,415	-		PP_3270	0.71	+0.3
3,705,433	+		PP_3270	0.72	-1.3
3,705,569	+		PP_3270	0.79	-0.2
3,705,607	-		PP_3270	0.81	-1.2
3,705,667	+		PP_3270	0.84	-0.5
3,705,749	-		PP_3270	0.88	+0.2
3,705,776	-		PP_3270	0.89	-0.3
3,705,856	+				-0.2
3,705,898	+				-3.4
3,705,898	+				+0.0
3,705,899	-				+0.6
3,705,906	+				+1.7
3,705,906	+				+1.0
3,705,907	-				-1.9
3,705,907	-				+0.6
3,706,040	+				-0.1
3,706,041	-				-0.5
3,706,059	-				-0.9
3,706,172	+		PP_3271	0.11	+0.9
3,706,172	+		PP_3271	0.11	-1.0
3,706,172	+		PP_3271	0.11	-0.0
3,706,172	+		PP_3271	0.11	+0.3
3,706,172	+		PP_3271	0.11	-0.4
3,706,172	+		PP_3271	0.11	-1.1
3,706,173	-		PP_3271	0.11	+0.1
3,706,173	-		PP_3271	0.11	+0.0
3,706,173	-		PP_3271	0.11	+0.4
3,706,173	-		PP_3271	0.11	-0.9
3,706,173	-		PP_3271	0.11	-0.6
3,706,173	-		PP_3271	0.11	-2.8
3,706,245	+		PP_3271	0.16	-1.3
3,706,248	-		PP_3271	0.17	+0.5
3,706,248	-		PP_3271	0.17	+0.4
3,706,248	-		PP_3271	0.17	-0.9
3,706,301	+		PP_3271	0.21	+1.0
3,706,347	-		PP_3271	0.25	+1.3
3,706,347	-		PP_3271	0.25	-0.4
3,706,604	+		PP_3271	0.45	+0.0
3,706,604	+		PP_3271	0.45	+1.5
3,706,605	-		PP_3271	0.45	-0.8
3,706,605	-		PP_3271	0.45	-0.8
3,706,625	+		PP_3271	0.47	-1.2
3,706,626	-		PP_3271	0.47	+0.9
3,706,626	-		PP_3271	0.47	+0.3
3,706,628	+		PP_3271	0.47	-1.4
3,706,629	-		PP_3271	0.47	-0.6
3,706,629	-		PP_3271	0.47	-3.8
3,706,631	+		PP_3271	0.47	-0.4
3,706,632	-		PP_3271	0.47	-0.6
3,706,661	+		PP_3271	0.50	-1.2
3,706,844	+		PP_3271	0.64	+0.4
3,706,844	+		PP_3271	0.64	+0.9
3,706,906	+		PP_3271	0.69	-1.7
3,706,906	+		PP_3271	0.69	-0.2
3,706,906	+		PP_3271	0.69	-0.8
3,706,906	+		PP_3271	0.69	+0.2
3,706,907	-		PP_3271	0.69	-1.5
3,706,907	-		PP_3271	0.69	-0.3
3,706,934	+		PP_3271	0.71	-1.2
3,706,934	+		PP_3271	0.71	-1.3
3,706,935	-		PP_3271	0.71	+0.3
3,707,156	+		PP_3271	0.89	-0.4
3,707,372	+				-1.0
3,707,406	+				+0.1
3,707,474	+		PP_3272	0.10	-0.1
3,707,801	+		PP_3272	0.31	-0.9
3,707,802	-		PP_3272	0.31	-0.5
3,707,802	-		PP_3272	0.31	+1.7
3,707,802	-		PP_3272	0.31	-0.2
3,707,802	-		PP_3272	0.31	-0.2
3,708,038	+		PP_3272	0.47	+0.1
3,708,038	+		PP_3272	0.47	-0.0
3,708,044	+		PP_3272	0.47	-0.5
3,708,044	+		PP_3272	0.47	+0.1
3,708,044	+		PP_3272	0.47	-0.8
3,708,045	-		PP_3272	0.47	-0.4
3,708,045	-		PP_3272	0.47	+1.1
3,708,045	-		PP_3272	0.47	+0.6
3,708,065	+		PP_3272	0.48	-0.1
3,708,124	-		PP_3272	0.52	+0.2