Strain Fitness in Pseudomonas putida KT2440 around PP_3262

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,695,807	-		PP_3260	0.86	-0.7
3,695,875	+		PP_3260	0.88	+0.7
3,695,891	+		PP_3260	0.89	+1.0
3,696,146	-				+1.6
3,696,146	-				-0.6
3,696,196	-				-1.4
3,696,196	-				-0.7
3,696,222	+				-0.2
3,696,315	+				+0.6
3,696,315	+				-0.4
3,696,316	-				+1.9
3,696,322	+				+0.7
3,696,322	+				-1.1
3,696,322	+				+0.9
3,696,323	-				+1.4
3,696,834	+		PP_3262	0.35	+1.4
3,696,835	-		PP_3262	0.35	-1.3
3,696,988	+				-0.3
3,697,030	+				-1.0
3,697,031	-				-2.5
3,697,143	-		PP_5595	0.17	-3.0
3,697,143	-		PP_5595	0.17	+1.2
3,697,143	-		PP_5595	0.17	+0.0
3,697,145	+		PP_5595	0.18	-1.9
3,697,145	+				+1.9
3,697,145	+		PP_5595	0.18	+0.2
3,697,146	-		PP_5595	0.18	+0.8
3,697,146	-				-1.7
3,697,146	-		PP_5595	0.18	+0.9
3,697,146	-		PP_5595	0.18	+0.2
3,697,146	-		PP_5595	0.18	-0.8
3,697,146	-		PP_5595	0.18	-0.4
3,697,355	+		PP_5595	0.68	-0.7
3,697,355	+		PP_5595	0.68	+0.8
3,697,362	-		PP_5595	0.70	-0.6
3,697,362	-		PP_5595	0.70	+0.9
3,697,362	-		PP_5595	0.70	+0.0
3,697,362	-		PP_5595	0.70	+0.2
3,697,579	-				+0.3
3,697,579	-				+0.2
3,697,611	+				-0.9
3,697,611	+				-0.0
3,697,614	+		PP_3263	0.10	-1.9
3,697,614	+		PP_3263	0.10	-0.2
3,697,615	-		PP_3263	0.10	+0.1
3,697,615	-		PP_3263	0.10	+0.2
3,697,777	-		PP_3263	0.27	-1.4
3,697,777	-		PP_3263	0.27	-0.0
3,697,941	+		PP_3263	0.44	-0.9