Strain Fitness in Pseudomonas putida KT2440 around PP_2819

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,216,214	-		PP_2818	0.68	-2.2
3,216,438	+		PP_2818	0.75	-0.2
3,216,438	+		PP_2818	0.75	-0.3
3,216,439	-		PP_2818	0.75	-0.2
3,216,439	-		PP_2818	0.75	-0.6
3,216,526	-		PP_2818	0.78	-2.8
3,217,240	+				-1.1
3,217,241	-				+0.7
3,217,286	+				-0.0
3,217,287	-				+0.9
3,217,287	-				+0.0
3,217,339	+				-0.9
3,217,592	+		PP_2819	0.27	-0.1
3,217,676	+		PP_2819	0.33	-1.0
3,217,677	-		PP_2819	0.33	-0.7
3,217,677	-		PP_2819	0.33	-0.7
3,217,677	-		PP_2819	0.33	-0.1
3,217,941	-		PP_2819	0.52	-1.6
3,218,149	+		PP_2819	0.67	+0.0
3,218,149	+		PP_2819	0.67	-1.6
3,218,150	-		PP_2819	0.67	-1.0
3,218,150	-		PP_2819	0.67	-1.8
3,218,324	+		PP_2819	0.79	-0.1
3,218,463	-		PP_2819	0.89	-0.3
3,218,493	-				+0.1
3,218,516	+				-0.8
3,218,516	+				+0.2
3,218,516	+				-0.2
3,218,516	+				-1.6
3,218,517	-				+0.3
3,218,803	+		PP_2820	0.18	-3.6
3,218,804	-		PP_2820	0.19	-1.2
3,218,804	-		PP_2820	0.19	-1.7
3,218,804	-		PP_2820	0.19	-2.0
3,219,092	-		PP_2820	0.70	-0.9
3,219,277	+				-1.7
3,219,311	-				-2.3
3,219,331	+				+1.2
3,219,488	+		PP_2821	0.13	-0.3
3,219,490	+		PP_2821	0.14	+0.4
3,219,490	+		PP_2821	0.14	+2.4
3,219,491	-		PP_2821	0.14	+1.0
3,219,596	-		PP_2821	0.40	-0.2