Strain Fitness in Pseudomonas putida KT2440 around PP_2817

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,212,088	+		PP_2815	0.90	-0.1
3,212,131	-				-0.3
3,212,215	+				-0.1
3,212,216	-				+0.3
3,212,243	+				-0.8
3,212,243	+				+0.0
3,212,244	-				-0.2
3,212,244	-				+0.0
3,212,281	-				+0.4
3,212,635	+		PP_2816	0.63	-0.5
3,212,635	+		PP_2816	0.63	+0.1
3,212,784	+		PP_2816	0.90	+1.0
3,212,785	-		PP_2816	0.90	+0.4
3,212,785	-		PP_2816	0.90	+1.2
3,213,040	-				+0.6
3,213,312	+		PP_2817	0.33	-1.9
3,213,312	+		PP_2817	0.33	-1.0
3,213,313	-		PP_2817	0.33	-0.1
3,213,445	-		PP_2817	0.45	+0.4
3,213,564	+		PP_2817	0.55	-0.4
3,213,792	+		PP_2817	0.75	+1.5
3,213,792	+		PP_2817	0.75	-0.8
3,213,792	+		PP_2817	0.75	+1.0
3,213,792	+		PP_2817	0.75	-0.4
3,213,792	+		PP_2817	0.75	-0.3
3,213,792	+		PP_2817	0.75	+0.8
3,213,792	+		PP_2817	0.75	-0.1
3,213,792	+		PP_2817	0.75	-0.3
3,213,793	-		PP_2817	0.76	-2.0
3,213,793	-		PP_2817	0.76	-1.4
3,213,793	-				+1.2
3,213,793	-		PP_2817	0.76	-1.4
3,213,793	-		PP_2817	0.76	+0.9
3,214,025	+				-1.2
3,214,230	+				+0.7
3,214,314	+				+0.9
3,214,314	+				+0.3
3,214,315	-				+0.8
3,214,504	-		PP_2818	0.13	+0.3
3,214,504	-		PP_2818	0.13	+0.3
3,214,539	-		PP_2818	0.14	+0.2
3,214,549	+		PP_2818	0.15	-0.2
3,214,557	+		PP_2818	0.15	-0.5
3,214,557	+		PP_2818	0.15	-0.3
3,214,558	-		PP_2818	0.15	-0.8
3,214,558	-		PP_2818	0.15	+0.6
3,214,558	-		PP_2818	0.15	-0.4
3,214,674	+		PP_2818	0.19	-0.1
3,214,729	+		PP_2818	0.21	+0.1
3,214,911	+		PP_2818	0.26	+0.9
3,214,912	-		PP_2818	0.26	-2.5
3,214,912	-		PP_2818	0.26	+1.6
3,214,912	-		PP_2818	0.26	+1.1
3,215,056	-		PP_2818	0.31	-0.3
3,215,067	+		PP_2818	0.31	+0.2