Strain Fitness in Pseudomonas putida KT2440 around PP_2751

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,133,265	-		PP_2750	0.43	-0.0
3,133,484	-		PP_2750	0.64	-0.2
3,133,484	-		PP_2750	0.64	-0.4
3,133,517	-		PP_2750	0.67	-0.3
3,133,815	-				-0.7
3,133,815	-				-0.5
3,133,815	-				-1.3
3,133,842	+				+0.2
3,134,066	-				-0.7
3,134,080	+				-0.1
3,134,131	+		PP_2751	0.14	-0.2
3,134,234	-				-1.4
3,134,443	+		PP_2751	0.37	+0.2
3,134,444	-		PP_2751	0.37	+1.0
3,134,444	-		PP_2751	0.37	+0.2
3,134,444	-		PP_2751	0.37	+0.1
3,134,518	+		PP_2751	0.43	+1.1
3,134,563	+		PP_2751	0.46	+2.1
3,134,564	-		PP_2751	0.46	-0.0
3,134,697	-		PP_2751	0.56	+0.3
3,134,867	+				-2.1
3,134,867	+		PP_2751	0.69	+1.5
3,134,868	-		PP_2751	0.69	-0.2
3,134,868	-		PP_2751	0.69	+0.2
3,134,868	-		PP_2751	0.69	+0.7
3,134,920	+		PP_2751	0.72	+0.3
3,134,921	-		PP_2751	0.73	+0.6
3,134,921	-		PP_2751	0.73	+0.0
3,134,921	-		PP_2751	0.73	+0.4
3,135,286	+				+0.2
3,135,286	+				-1.5
3,135,286	+				+0.5
3,135,302	-				+0.9
3,135,371	+				-0.6
3,135,372	-				-0.3
3,135,372	-				-0.6
3,135,477	+				-0.0
3,135,519	+		PP_2752	0.13	+2.1
3,135,520	-		PP_2752	0.13	+0.8
3,135,529	-		PP_2752	0.14	-1.3
3,135,622	-		PP_2752	0.21	-0.5
3,135,694	-		PP_2752	0.26	+1.6
3,135,786	+		PP_2752	0.33	-3.8
3,135,840	+		PP_2752	0.37	+0.5
3,135,841	-		PP_2752	0.37	+0.7
3,135,961	-		PP_2752	0.46	-1.1
3,136,197	+		PP_2752	0.64	+0.2