Strain Fitness in Pseudomonas putida KT2440 around PP_2230

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,535,169	-		PP_2228	0.63	-0.2
2,535,224	-		PP_2228	0.67	+1.7
2,535,280	+		PP_2228	0.70	+1.9
2,535,280	+		PP_2228	0.70	+0.2
2,535,281	-		PP_2228	0.70	-0.4
2,535,281	-		PP_2228	0.70	+0.1
2,535,335	-		PP_2228	0.73	-1.1
2,535,335	-				-0.2
2,535,335	-		PP_2228	0.73	+0.4
2,535,404	-		PP_2228	0.77	-1.9
2,535,404	-		PP_2228	0.77	+0.4
2,535,478	-		PP_2228	0.82	-0.9
2,535,731	+				-2.1
2,535,922	-		PP_2229	0.41	+1.4
2,535,922	-		PP_2229	0.41	+1.4
2,536,015	-		PP_2229	0.68	-0.3
2,536,015	-		PP_2229	0.68	-0.0
2,536,047	+		PP_2229	0.78	-0.4
2,536,047	+		PP_2229	0.78	-0.9
2,536,047	-		PP_2229	0.78	+2.0
2,536,048	-		PP_2229	0.78	-1.0
2,536,048	-		PP_2229	0.78	-1.1
2,536,169	+				+0.3
2,536,235	+				-1.9
2,536,235	+				-0.2
2,536,235	+				-0.5
2,536,235	+				+0.4
2,536,235	+				-0.6
2,536,235	+				+0.4
2,536,236	-				-1.6
2,536,238	-				-0.3
2,536,445	+		PP_2230	0.11	-1.2
2,536,446	-		PP_2230	0.11	+0.4
2,536,527	-		PP_2230	0.14	-0.7
2,536,527	-		PP_2230	0.14	+0.6
2,536,603	-		PP_2230	0.16	+0.5
2,536,603	-		PP_2230	0.16	-0.2
2,536,745	-		PP_2230	0.21	-0.3
2,536,745	-		PP_2230	0.21	-0.3
2,536,841	+		PP_2230	0.25	-0.3
2,536,887	-		PP_2230	0.26	+0.2
2,536,887	-		PP_2230	0.26	+0.6
2,536,887	-		PP_2230	0.26	-2.1
2,537,032	+		PP_2230	0.31	-0.7
2,537,032	+		PP_2230	0.31	-1.2
2,537,156	+		PP_2230	0.35	-0.3
2,537,157	-		PP_2230	0.35	-0.4
2,537,267	+		PP_2230	0.39	-0.3
2,537,267	+		PP_2230	0.39	+0.5
2,537,267	+		PP_2230	0.39	-3.1
2,537,267	+		PP_2230	0.39	-1.6
2,537,268	-		PP_2230	0.39	-0.4
2,537,268	-		PP_2230	0.39	-0.3
2,537,268	-		PP_2230	0.39	-0.8
2,537,275	-		PP_2230	0.40	-1.5
2,537,275	-		PP_2230	0.40	+1.0
2,537,275	-		PP_2230	0.40	-0.4
2,537,305	+				+0.5
2,537,305	+		PP_2230	0.41	+0.7
2,537,305	+		PP_2230	0.41	-1.6
2,537,481	-		PP_2230	0.47	+1.7
2,537,642	-		PP_2230	0.52	-0.0
2,537,751	+		PP_2230	0.56	+0.4
2,537,765	+		PP_2230	0.56	+0.9
2,537,939	+		PP_2230	0.62	-0.8
2,538,137	+		PP_2230	0.69	-2.6
2,538,251	-		PP_2230	0.73	-0.2
2,538,312	-		PP_2230	0.75	+0.1
2,538,400	+		PP_2230	0.78	-0.0
2,538,401	-		PP_2230	0.78	-1.1
2,538,401	-		PP_2230	0.78	-0.8
2,538,401	-		PP_2230	0.78	+0.3
2,538,444	+		PP_2230	0.80	-1.1
2,538,476	+		PP_2230	0.81	-2.2
2,538,477	-		PP_2230	0.81	+1.0
2,538,477	-		PP_2230	0.81	-0.0
2,538,511	+		PP_2230	0.82	-0.1
2,538,555	+		PP_2230	0.83	-0.6
2,538,555	+		PP_2230	0.83	-0.3
2,538,556	-		PP_2230	0.83	-0.6
2,538,556	-		PP_2230	0.83	-1.7
2,538,557	+		PP_2230	0.83	-0.3
2,538,557	+		PP_2230	0.83	+0.2
2,538,557	+		PP_2230	0.83	-0.0
2,538,558	-				+3.3
2,538,558	-		PP_2230	0.84	-0.9
2,538,558	-		PP_2230	0.84	+0.3
2,538,558	-		PP_2230	0.84	-0.0
2,538,743	+		PP_2230	0.90	-0.7
2,538,743	+		PP_2230	0.90	-0.1
2,538,743	+		PP_2230	0.90	-1.4
2,538,743	+		PP_2230	0.90	-3.1
2,538,744	-		PP_2230	0.90	-0.0
2,538,744	-		PP_2230	0.90	+1.8
2,538,744	-		PP_2230	0.90	-0.7
2,538,744	-		PP_2230	0.90	-1.6
2,538,744	-		PP_2230	0.90	-0.7
2,538,747	-				-1.0
2,538,755	+				+1.2
2,538,755	+				-0.5
2,538,756	-				-0.5
2,538,784	+				+0.4
2,538,785	-				+0.2
2,538,900	-				+1.6
2,538,910	+				+1.4
2,538,964	-				+1.7
2,539,027	+				-0.3
2,539,027	+				+0.0
2,539,038	+				+1.0
2,539,038	+				+0.7
2,539,039	-				+0.1
2,539,047	-				-0.5
2,539,073	+				+0.5
2,539,151	+				-2.1
2,539,190	+				-0.5
2,539,191	-				+1.3
2,539,379	+		PP_2231	0.20	-0.3
2,539,379	+		PP_2231	0.20	+0.2
2,539,380	-		PP_2231	0.20	+0.3
2,539,732	-		PP_2231	0.57	+0.2
2,539,802	+		PP_2231	0.64	+0.4
2,539,802	+		PP_2231	0.64	+1.1
2,540,025	+		PP_2231	0.88	-1.3