Strain Fitness in Pseudomonas putida KT2440 around PP_1962

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,221,660	-				-2.0
2,221,674	+				-0.2
2,221,783	+		PP_1961	0.16	+0.9
2,221,783	+		PP_1961	0.16	-0.1
2,221,967	+		PP_1961	0.34	-1.9
2,222,094	+		PP_1961	0.47	-0.1
2,222,173	-		PP_1961	0.55	+1.2
2,222,177	+		PP_1961	0.55	-0.4
2,222,272	-		PP_1961	0.65	+0.3
2,222,299	+		PP_1961	0.68	-0.1
2,222,299	+		PP_1961	0.68	+0.9
2,222,299	+		PP_1961	0.68	-0.5
2,222,299	+		PP_1961	0.68	+0.8
2,222,299	+		PP_1961	0.68	+1.1
2,222,300	-		PP_1961	0.68	-0.4
2,222,396	+		PP_1961	0.77	+0.7
2,222,397	-		PP_1961	0.78	+0.5
2,222,397	-		PP_1961	0.78	+0.2
2,222,445	-		PP_1961	0.82	-1.0
2,222,482	+		PP_1961	0.86	-0.1
2,222,483	-		PP_1961	0.86	-0.9
2,222,541	+				+0.1
2,222,549	+				-2.0
2,222,625	-				-0.0
2,222,772	+				+2.1
2,222,816	+		PP_1962	0.10	+1.7
2,222,827	+		PP_1962	0.11	-2.1
2,222,943	+		PP_1962	0.17	+0.6
2,222,943	+		PP_1962	0.17	-0.1
2,222,943	+		PP_1962	0.17	+0.1
2,222,943	+		PP_1962	0.17	+0.7
2,222,943	+		PP_1962	0.17	+0.2
2,222,943	+		PP_1962	0.17	+0.3
2,222,943	+		PP_1962	0.17	-0.5
2,222,970	+		PP_1962	0.18	+1.1
2,222,970	+		PP_1962	0.18	+1.2
2,223,008	+		PP_1962	0.20	+1.1
2,223,008	+		PP_1962	0.20	+1.3
2,223,020	+		PP_1962	0.21	+0.4
2,223,166	+		PP_1962	0.28	+0.6
2,223,166	+		PP_1962	0.28	+0.3
2,223,170	+		PP_1962	0.29	+0.2
2,223,170	+		PP_1962	0.29	+2.4
2,223,222	+		PP_1962	0.31	+1.1
2,223,222	+		PP_1962	0.31	+0.9
2,223,438	+		PP_1962	0.43	-0.6
2,223,451	+		PP_1962	0.43	+0.6
2,223,852	+		PP_1962	0.64	+1.9
2,223,879	+		PP_1962	0.65	-0.4
2,224,031	-		PP_1962	0.73	+1.8
2,224,046	-		PP_1962	0.74	-0.2
2,224,339	-		PP_1962	0.89	-0.6
2,224,454	+				-0.0
2,224,876	+		PP_1963	0.12	+0.8
2,224,911	+		PP_1963	0.14	+0.5
2,224,911	+		PP_1963	0.14	-0.8
2,224,912	-		PP_1963	0.14	-1.8
2,225,090	+		PP_1963	0.23	-1.1
2,225,135	+		PP_1963	0.25	-0.7
2,225,243	+		PP_1963	0.31	-1.1
2,225,258	+		PP_1963	0.31	+1.1