Strain Fitness in Pseudomonas putida KT2440 around PP_1493

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,697,451	-		PP_1492	0.65	+1.4
1,697,470	+		PP_1492	0.66	-0.3
1,697,551	+		PP_1492	0.69	-1.1
1,697,552	-		PP_1492	0.69	-1.8
1,697,651	+		PP_1492	0.74	+1.1
1,697,652	-		PP_1492	0.74	-0.0
1,697,652	-		PP_1492	0.74	+2.1
1,697,652	-		PP_1492	0.74	-0.1
1,697,800	-		PP_1492	0.80	+0.6
1,698,125	+				+1.1
1,698,125	+				-0.4
1,698,125	+				+1.1
1,698,125	+				-0.1
1,698,126	-				-1.6
1,698,126	-				-0.4
1,698,126	-				+1.5
1,698,126	-				-0.7
1,698,127	+				+0.1
1,698,127	+				-0.9
1,698,177	-				+0.1
1,698,177	-				-0.4
1,698,177	-				+0.1
1,698,179	+				+0.7
1,698,179	+				+1.1
1,698,179	+				-0.5
1,698,389	+		PP_1493	0.13	-4.6
1,698,389	+		PP_1493	0.13	-2.8
1,698,501	+		PP_1493	0.24	-0.8
1,698,502	-		PP_1493	0.25	+0.4
1,698,917	+		PP_1493	0.65	-1.5
1,698,917	+		PP_1493	0.65	-4.0
1,698,917	+		PP_1493	0.65	-4.7
1,698,954	-		PP_1493	0.69	-1.9
1,699,042	+		PP_1493	0.78	-2.8
1,699,043	-		PP_1493	0.78	-1.9
1,699,168	+				-2.2
1,699,274	+				-0.8
1,699,715	-		PP_1494	0.40	+0.3
1,699,729	+		PP_1494	0.41	-0.6
1,699,730	-		PP_1494	0.41	+0.4
1,699,730	-		PP_1494	0.41	+0.4
1,699,730	-		PP_1494	0.41	+0.1
1,699,946	-		PP_1494	0.63	-0.5
1,699,949	+		PP_1494	0.63	-0.7
1,699,958	-		PP_1494	0.64	+0.1
1,699,958	-		PP_1494	0.64	+0.3
1,700,022	+		PP_1494	0.70	+0.2
1,700,167	-		PP_1494	0.85	+2.7
1,700,185	-		PP_1494	0.86	+1.1