Strain Fitness in Pseudomonas putida KT2440 around PP_1083

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,241,990	+				-2.0
1,241,990	+				+0.1
1,241,991	-				-0.2
1,241,994	+				-1.8
1,241,994	+				-1.1
1,241,995	-				-0.5
1,242,021	+				-0.3
1,242,101	-		PP_1082	0.23	-2.1
1,242,103	-		PP_1082	0.23	-1.9
1,242,265	+		PP_1082	0.57	-3.6
1,242,266	-		PP_1082	0.58	-1.6
1,242,266	-		PP_1082	0.58	-3.0
1,242,283	+		PP_1082	0.61	-2.5
1,242,373	-		PP_1082	0.80	-0.9
1,242,373	-				-0.6
1,242,452	+				-2.4
1,242,453	-				-1.1
1,242,453	-				-2.9
1,242,453	-				-2.1
1,242,485	-				+0.3
1,242,519	+				-1.7
1,242,523	+				-2.0
1,242,812	-		PP_1083	0.67	-3.1
1,242,812	-		PP_1083	0.67	-3.8
1,242,829	+		PP_1083	0.74	-2.3
1,242,829	+		PP_1083	0.74	-2.1
1,242,829	+		PP_1083	0.74	-2.1
1,242,830	-		PP_1083	0.75	-1.7
1,242,830	-		PP_1083	0.75	-2.5
1,242,830	-		PP_1083	0.75	-3.0
1,242,880	+				-2.0
1,242,880	+				-2.7
1,242,880	+				-3.1
1,242,880	+				-2.0
1,242,880	+				-4.1
1,242,880	+				-3.1
1,242,880	+				-1.7
1,242,880	+				-1.9
1,242,880	+				-0.7
1,242,880	+				-1.4
1,242,880	+				-0.7
1,242,880	+				-3.0
1,242,880	+				-0.6
1,242,880	+				-1.8
1,242,880	+				-2.9
1,242,881	-				-2.5
1,242,881	-				-4.7
1,242,881	-				-2.5
1,242,881	-				-1.5
1,242,881	-				-1.3
1,242,881	-				-1.1
1,242,881	-				-3.3
1,242,881	-				-1.6
1,242,881	-				-2.5
1,242,881	-				-1.6
1,242,881	-				-2.2
1,242,881	-				-2.1
1,242,881	-				-2.1
1,242,881	-				-1.2
1,242,881	-				-0.8
1,242,881	-				-3.0
1,242,881	-				-2.5
1,242,881	-				-1.7
1,242,881	-				-1.8
1,242,881	-				-1.7
1,242,881	-				-3.3
1,242,881	-				-0.3
1,242,881	-				-1.9
1,242,881	-				-3.3
1,242,881	-				-2.9
1,242,881	-				-2.3
1,242,881	-				-2.5
1,242,884	+				-4.3
1,242,884	+				-1.1
1,242,884	+				-1.3
1,242,885	-				-1.3
1,242,885	-				-3.0
1,242,885	-				+0.1
1,242,885	-				-2.1
1,243,028	+				+0.6
1,243,028	+				+0.2
1,243,028	+				-0.2
1,243,028	+				-0.8
1,243,028	+				-0.9
1,243,029	-				+0.2
1,243,029	-				-0.6
1,243,105	+				-1.6
1,243,105	+				+0.7
1,243,106	-				-0.3
1,243,116	+				+0.0
1,243,116	+				+1.5
1,243,117	-				-0.3
1,243,117	-				-2.2
1,243,127	-				+1.8
1,243,183	+		PP_1084	0.12	+0.6
1,243,217	+		PP_1084	0.18	-1.4
1,243,217	+		PP_1084	0.18	+0.4
1,243,217	+		PP_1084	0.18	+0.5
1,243,217	+		PP_1084	0.18	-1.5
1,243,236	-		PP_1084	0.21	+0.6
1,243,369	+		PP_1084	0.43	-2.1
1,243,409	+		PP_1084	0.50	+0.5
1,243,409	+		PP_1084	0.50	-0.1
1,243,409	+		PP_1084	0.50	-0.5
1,243,410	-		PP_1084	0.50	+2.2
1,243,410	-		PP_1084	0.50	+0.2
1,243,451	+		PP_1084	0.57	-0.6
1,243,504	+		PP_1084	0.66	+0.8
1,243,504	+		PP_1084	0.66	+0.4
1,243,505	-		PP_1084	0.66	-0.9
1,243,709	+				+0.7
1,243,710	-				-0.7
1,243,710	-				+1.0
1,243,756	-				+0.4
1,243,803	+				+0.7
1,243,803	+				-0.5
1,243,804	-				+0.5
1,243,804	-				-0.4