Strain Fitness in Pseudomonas putida KT2440 around PP_0483

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
565,673	+		PP_0481	0.80	+0.6
565,762	+		PP_0481	0.86	+0.6
565,769	+		PP_0481	0.87	-2.0
565,770	-		PP_0481	0.87	-1.3
565,834	+				-0.7
565,834	+				+1.1
565,887	+				+1.2
565,887	+				+0.0
565,887	+				-1.3
565,892	+				+0.8
565,892	+				-2.9
565,893	-				-0.4
565,917	-				-0.4
566,010	+				-0.3
566,011	-				-1.3
566,066	-				-1.3
566,066	-				-1.5
566,086	+				+1.7
566,086	+				+0.6
566,086	+				-1.2
566,086	+				-0.5
566,087	-				-1.5
566,095	+				-2.2
566,095	+				+0.6
566,096	-				-2.5
566,143	+				-2.1
566,144	-				-0.2
566,144	-				-2.7
566,144	-				-1.2
566,144	-				-1.6
566,151	+				-4.1
566,151	+				-1.7
566,152	-				-3.4
566,152	-				-1.9
566,196	+		PP_0482	0.15	-1.5
566,196	+		PP_0482	0.15	-1.8
566,196	+		PP_0482	0.15	-3.7
566,217	+		PP_0482	0.20	+0.0
566,218	-		PP_0482	0.20	-1.8
566,218	-		PP_0482	0.20	-1.8
566,244	+		PP_0482	0.26	-1.8
566,360	+		PP_0482	0.51	-0.5
566,361	-		PP_0482	0.51	-2.5
566,403	+		PP_0482	0.60	-0.7
566,403	+		PP_0482	0.60	-0.4
566,404	-		PP_0482	0.60	-0.7
566,404	-		PP_0482	0.60	-2.4
566,460	+		PP_0482	0.72	-1.9
566,460	+		PP_0482	0.72	-3.9
566,460	+		PP_0482	0.72	-1.8
566,460	+		PP_0482	0.72	-2.0
566,460	+		PP_0482	0.72	-1.3
566,461	-		PP_0482	0.72	-2.2
566,461	-		PP_0482	0.72	-1.6
566,461	-		PP_0482	0.72	-3.7
566,517	+		PP_0482	0.85	-0.5
566,518	-		PP_0482	0.85	-1.9
566,518	-		PP_0482	0.85	-1.3
566,586	+				-1.6
566,586	+				-1.5
566,586	+				-0.8
566,586	+				+1.3
566,587	-				+0.5
566,587	-				-0.0
566,587	-				-1.1
566,587	-				-1.1
566,587	-				+0.7
566,587	-				-0.3
566,607	+				-1.3
566,630	-				-1.9
566,659	-				-0.3
567,220	+		PP_0483	0.20	-2.1
567,970	+		PP_0483	0.46	+0.9
569,518	-				+0.3
569,529	+				-1.5
569,530	-				+0.1
569,530	-				+0.7
569,567	-				-0.5
569,705	+				-2.0
569,706	-				-3.4
569,734	+				-1.5
569,745	+				-2.9
569,802	+		PP_0484	0.13	-3.5
569,802	+		PP_0484	0.13	-2.7
569,803	-		PP_0484	0.13	-2.9
569,803	-		PP_0484	0.13	-1.3
569,878	-		PP_0484	0.18	-1.7
569,911	+		PP_0484	0.21	-2.4
569,911	+		PP_0484	0.21	-1.2
569,912	-		PP_0484	0.21	-1.3
569,912	-		PP_0484	0.21	-2.9
569,933	+		PP_0484	0.22	-0.9
570,393	+		PP_0484	0.55	-0.6
570,394	-				-2.3
570,394	-		PP_0484	0.55	-2.7
570,444	+		PP_0484	0.59	-3.6
570,444	+		PP_0484	0.59	-2.5
570,444	+		PP_0484	0.59	-3.2
570,445	-		PP_0484	0.59	-3.4
570,445	-		PP_0484	0.59	-0.6
570,445	-		PP_0484	0.59	-2.9