Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0258 and PP_0259 are separated by 50 nucleotides PP_0259 and PP_0260 are separated by 64 nucleotides PP_0260 and PP_0261 are separated by 14 nucleotides PP_0261 and PP_0262 are separated by 82 nucleotides
PP_0258: PP_0258 - regulator of murein cross-linking, at 313,387 to 313,827
_0258
PP_0259: PP_0259 - purine nucleotidase, at 313,878 to 314,540
_0259
PP_0260: PP_0260 - ADP-sugar pyrophosphorylase, at 314,605 to 315,171
_0260
PP_0261: PP_0261 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 315,186 to 315,986
_0261
PP_0262: PP_0262 - conserved protein of unknown function, at 316,069 to 316,524
_0262
Position (kb) 314
315
316 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 313.723 kb on + strand, within PP_0258 at 313.724 kb on - strand, within PP_0258 at 313.741 kb on + strand, within PP_0258 at 313.742 kb on - strand, within PP_0258 at 313.841 kb on + strand at 313.841 kb on + strand at 313.879 kb on + strand at 313.880 kb on - strand at 313.887 kb on + strand at 313.893 kb on + strand at 314.110 kb on + strand, within PP_0259 at 314.110 kb on + strand, within PP_0259 at 314.111 kb on - strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.247 kb on - strand, within PP_0259 at 314.313 kb on + strand, within PP_0259 at 314.313 kb on + strand, within PP_0259 at 314.314 kb on - strand, within PP_0259 at 314.314 kb on - strand, within PP_0259 at 314.341 kb on + strand, within PP_0259 at 314.410 kb on - strand, within PP_0259 at 314.467 kb on + strand, within PP_0259 at 314.468 kb on - strand, within PP_0259 at 314.468 kb on - strand, within PP_0259 at 314.572 kb on + strand at 314.572 kb on + strand at 314.572 kb on + strand at 314.572 kb on + strand at 314.573 kb on - strand at 314.573 kb on - strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.577 kb on + strand at 314.624 kb on + strand at 314.675 kb on + strand, within PP_0260 at 314.675 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.800 kb on + strand, within PP_0260 at 314.801 kb on - strand, within PP_0260 at 314.821 kb on + strand, within PP_0260 at 314.822 kb on - strand, within PP_0260 at 314.822 kb on - strand, within PP_0260 at 314.959 kb on + strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.168 kb on - strand at 315.301 kb on + strand, within PP_0261 at 315.380 kb on + strand, within PP_0261 at 315.380 kb on + strand, within PP_0261 at 315.380 kb on + strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.550 kb on - strand, within PP_0261 at 315.616 kb on + strand, within PP_0261 at 315.616 kb on + strand, within PP_0261 at 315.616 kb on + strand, within PP_0261 at 315.617 kb on - strand, within PP_0261 at 315.617 kb on - strand, within PP_0261 at 315.825 kb on - strand, within PP_0261 at 315.920 kb on + strand at 315.927 kb on + strand at 315.927 kb on + strand at 315.927 kb on + strand at 315.946 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.985 kb on - strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.068 kb on - strand at 316.070 kb on + strand at 316.070 kb on + strand at 316.071 kb on - strand at 316.071 kb on - strand at 316.085 kb on + strand at 316.085 kb on + strand at 316.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 313,723 + PP_0258 0.76 +0.7 313,724 - PP_0258 0.76 +0.5 313,741 + PP_0258 0.80 -1.1 313,742 - PP_0258 0.80 +0.5 313,841 + -0.0 313,841 + +0.7 313,879 + -0.7 313,880 - +1.0 313,887 + -0.8 313,893 + +0.0 314,110 + PP_0259 0.35 -1.1 314,110 + PP_0259 0.35 +0.7 314,111 - PP_0259 0.35 -0.7 314,140 + PP_0259 0.40 -1.5 314,140 + PP_0259 0.40 +0.5 314,140 + PP_0259 0.40 -0.5 314,140 + PP_0259 0.40 +0.5 314,141 - PP_0259 0.40 +1.1 314,141 - PP_0259 0.40 -0.0 314,141 - PP_0259 0.40 -0.6 314,247 - PP_0259 0.56 -4.3 314,313 + PP_0259 0.66 -2.0 314,313 + PP_0259 0.66 +0.2 314,314 - PP_0259 0.66 +0.2 314,314 - PP_0259 0.66 -0.1 314,341 + PP_0259 0.70 +1.1 314,410 - PP_0259 0.80 -2.6 314,467 + PP_0259 0.89 +1.0 314,468 - PP_0259 0.89 +0.0 314,468 - PP_0259 0.89 +0.4 314,572 + -0.3 314,572 + -1.8 314,572 + +0.7 314,572 + +1.4 314,573 - -0.8 314,573 - -0.1 314,574 + +0.3 314,574 + -0.6 314,574 + +0.7 314,574 + +0.4 314,574 + +0.3 314,575 - -0.4 314,575 - -1.7 314,575 - +0.1 314,575 - +0.9 314,575 - +1.1 314,575 - -0.1 314,575 - +1.4 314,577 + +1.0 314,624 + +0.2 314,675 + PP_0260 0.12 +0.7 314,675 + PP_0260 0.12 -1.4 314,710 + PP_0260 0.19 -0.4 314,710 + PP_0260 0.19 -0.3 314,710 + PP_0260 0.19 -0.5 314,710 + PP_0260 0.19 +0.7 314,711 - PP_0260 0.19 -0.9 314,711 - PP_0260 0.19 -1.9 314,711 - PP_0260 0.19 -0.5 314,711 - PP_0260 0.19 -1.9 314,800 + PP_0260 0.34 -0.0 314,801 - PP_0260 0.35 -2.3 314,821 + PP_0260 0.38 -0.3 314,822 - PP_0260 0.38 -1.1 314,822 - PP_0260 0.38 -2.3 314,959 + PP_0260 0.62 -0.6 314,960 - PP_0260 0.63 -4.1 314,960 - PP_0260 0.63 -0.3 314,960 - PP_0260 0.63 -1.4 314,960 - PP_0260 0.63 -1.6 315,167 + -0.4 315,167 + +0.6 315,167 + +0.1 315,167 + -0.6 315,167 + +0.4 315,167 + +0.5 315,167 + +0.3 315,168 - +0.5 315,301 + PP_0261 0.14 -1.6 315,380 + PP_0261 0.24 -1.1 315,380 + PP_0261 0.24 -3.1 315,380 + PP_0261 0.24 +1.2 315,381 - PP_0261 0.24 -2.7 315,381 - PP_0261 0.24 -2.8 315,381 - PP_0261 0.24 -2.4 315,381 - PP_0261 0.24 -2.0 315,550 - PP_0261 0.45 -1.1 315,616 + PP_0261 0.54 -2.3 315,616 + PP_0261 0.54 -1.3 315,616 + PP_0261 0.54 -1.9 315,617 - PP_0261 0.54 -3.0 315,617 - PP_0261 0.54 -1.3 315,825 - PP_0261 0.80 -1.7 315,920 + -3.9 315,927 + -3.5 315,927 + -0.8 315,927 + -0.5 315,946 + -1.9 315,984 + -0.2 315,984 + -1.1 315,984 + -1.6 315,984 + -1.6 315,984 + -0.3 315,984 + +0.7 315,984 + +1.4 315,984 + +0.8 315,985 - -1.3 316,067 + +1.5 316,067 + -0.0 316,067 + -0.2 316,067 + -0.1 316,068 - +0.9 316,070 + +0.8 316,070 + -0.8 316,071 - +0.4 316,071 - -1.8 316,085 + +1.7 316,085 + -0.2 316,086 - +0.1
Or see this region's nucleotide sequence