Strain Fitness in Pseudomonas putida KT2440 around PP_5748

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4320 and PP_5748 overlap by 8 nucleotidesPP_5748 and PP_4321 overlap by 4 nucleotidesPP_4321 and PP_4322 overlap by 4 nucleotides PP_4320: PP_4320 - cytochrome c-type biogenesis protein, at 4,910,515 to 4,911,711 _4320 PP_5748: PP_5748 - cytochrome c heme lyase subunit, at 4,911,704 to 4,912,180 _5748 PP_4321: PP_4321 - holocytochrome c synthetase subunit, at 4,912,177 to 4,912,713 _4321 PP_4322: PP_4322 - holocytochrome c synthetase, at 4,912,710 to 4,914,698 _4322 Position (kb) 4911 4912 4913Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4910.781 kb on + strand, within PP_4320at 4910.782 kb on - strand, within PP_4320at 4910.919 kb on + strand, within PP_4320at 4910.984 kb on + strand, within PP_4320at 4911.003 kb on - strand, within PP_4320at 4911.198 kb on + strand, within PP_4320at 4911.233 kb on + strand, within PP_4320at 4911.234 kb on - strand, within PP_4320at 4911.251 kb on + strand, within PP_4320at 4911.251 kb on + strand, within PP_4320at 4911.252 kb on - strand, within PP_4320at 4911.252 kb on - strand, within PP_4320at 4911.303 kb on + strand, within PP_4320at 4911.384 kb on - strandat 4912.108 kb on - strand, within PP_5748at 4912.108 kb on - strand, within PP_5748at 4912.314 kb on - strandat 4912.854 kb on - strandat 4912.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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4,910,781 + PP_4320 0.22 -0.7
4,910,782 - PP_4320 0.22 -2.6
4,910,919 + PP_4320 0.34 +0.5
4,910,984 + PP_4320 0.39 -3.9
4,911,003 - PP_4320 0.41 +0.0
4,911,198 + PP_4320 0.57 -1.1
4,911,233 + PP_4320 0.60 -3.2
4,911,234 - PP_4320 0.60 -2.1
4,911,251 + PP_4320 0.61 -0.9
4,911,251 + PP_4320 0.61 -3.9
4,911,252 - PP_4320 0.62 -2.3
4,911,252 - PP_4320 0.62 -1.6
4,911,303 + PP_4320 0.66 +0.4
4,911,384 - -1.1
4,912,108 - PP_5748 0.85 -0.1
4,912,108 - PP_5748 0.85 -1.6
4,912,314 - +1.9
4,912,854 - +0.4
4,912,858 - -1.8

Or see this region's nucleotide sequence