Strain Fitness in Pseudomonas putida KT2440 around PP_5715

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,489,968	-		PP_4825	0.75	-0.0
5,489,981	+		PP_4825	0.77	-1.2
5,489,981	+		PP_4825	0.77	-0.3
5,489,981	+		PP_4825	0.77	+0.9
5,489,981	+		PP_4825	0.77	+1.5
5,489,981	+		PP_4825	0.77	-1.9
5,489,981	+		PP_4825	0.77	-0.2
5,489,981	+		PP_4825	0.77	-1.3
5,489,981	+		PP_4825	0.77	+0.6
5,489,981	+		PP_4825	0.77	+0.9
5,489,982	-		PP_4825	0.78	+1.0
5,489,982	-		PP_4825	0.78	+0.8
5,489,982	-		PP_4825	0.78	-0.4
5,489,985	+		PP_4825	0.78	-0.6
5,489,986	-		PP_4825	0.78	+1.1
5,490,051	+		PP_4825	0.89	+0.2
5,490,052	-		PP_4825	0.89	+0.8
5,490,052	-		PP_4825	0.89	+0.8
5,490,052	-		PP_4825	0.89	+0.8
5,490,085	+				-0.0
5,490,102	-				-0.4
5,490,113	+				+0.6
5,490,127	+				-0.7
5,490,127	+				-0.4
5,490,147	-				+2.4
5,490,255	+		PP_5714	0.20	+0.0
5,490,256	-		PP_5714	0.20	+1.8
5,490,256	-		PP_5714	0.20	-0.9
5,490,256	-		PP_5714	0.20	+1.8
5,490,472	+		PP_5714	0.53	-0.6
5,490,472	+		PP_5714	0.53	-0.6
5,490,605	-		PP_5714	0.73	-1.2
5,490,708	-		PP_5714	0.89	+0.5
5,490,847	-		PP_5715	0.10	-1.2
5,490,899	+				+2.0
5,490,900	-		PP_5715	0.18	+0.7
5,490,988	-		PP_5715	0.31	-0.3
5,490,988	-		PP_5715	0.31	+1.3
5,491,027	+		PP_5715	0.37	-1.9
5,491,028	-		PP_5715	0.37	-2.5
5,491,028	-		PP_5715	0.37	-0.9
5,491,065	+		PP_5715	0.42	+0.4
5,491,066	-		PP_5715	0.42	-1.2
5,491,096	+		PP_5715	0.47	-2.1
5,491,096	+		PP_5715	0.47	+0.8
5,491,133	+		PP_5715	0.52	-0.9
5,491,134	-		PP_5715	0.52	-1.0
5,491,301	+		PP_5715	0.76	+2.0
5,491,302	-		PP_5715	0.76	-2.3
5,491,302	-		PP_5715	0.76	-1.1
5,491,302	-		PP_5715	0.76	+1.9
5,491,355	+		PP_5715	0.84	-1.5
5,491,355	+		PP_5715	0.84	-0.5
5,491,355	+		PP_5715	0.84	+0.8
5,491,356	-		PP_5715	0.84	-0.9
5,491,452	-				+1.8
5,491,452	-				-0.7
5,491,468	+				-1.0
5,491,468	+				-0.5
5,491,468	+				-0.2
5,491,468	+				-0.1
5,491,469	-				+0.3
5,491,469	-				+0.7
5,491,469	-				-2.1
5,491,509	+				-3.6
5,491,571	-				+0.0
5,491,670	+		PP_5716	0.23	-0.5
5,491,670	+		PP_5716	0.23	+1.0
5,491,671	-		PP_5716	0.23	-0.0
5,491,671	-		PP_5716	0.23	+1.3
5,491,876	+		PP_5716	0.53	+0.4
5,491,876	+		PP_5716	0.53	+0.7
5,491,876	+		PP_5716	0.53	+0.3
5,491,877	-		PP_5716	0.53	-0.4
5,491,898	+		PP_5716	0.56	-0.3
5,491,898	+		PP_5716	0.56	+0.0
5,491,947	+		PP_5716	0.63	+0.1
5,491,947	+		PP_5716	0.63	+0.2
5,491,947	+		PP_5716	0.63	+2.9
5,491,948	-		PP_5716	0.63	+1.1
5,491,948	-		PP_5716	0.63	+0.0
5,491,948	-		PP_5716	0.63	+0.7
5,491,948	-		PP_5716	0.63	-0.1
5,491,948	-		PP_5716	0.63	+1.5
5,491,969	+		PP_5716	0.66	-0.0
5,492,012	+		PP_5716	0.73	+1.6
5,492,012	+		PP_5716	0.73	+0.7
5,492,012	+		PP_5716	0.73	+0.7
5,492,012	+		PP_5716	0.73	+0.4
5,492,012	+		PP_5716	0.73	+0.8
5,492,013	-		PP_5716	0.73	-0.5
5,492,018	+		PP_5716	0.73	+0.9
5,492,018	+		PP_5716	0.73	-1.5
5,492,019	-		PP_5716	0.74	+0.5
5,492,019	-		PP_5716	0.74	+1.3
5,492,019	-		PP_5716	0.74	-1.2
5,492,019	-		PP_5716	0.74	-2.4
5,492,019	-		PP_5716	0.74	-0.4
5,492,049	+		PP_5716	0.78	-0.0
5,492,049	+		PP_5716	0.78	-0.3
5,492,049	+		PP_5716	0.78	-0.1
5,492,050	-		PP_5716	0.78	+2.5
5,492,050	-		PP_5716	0.78	+0.6
5,492,116	+		PP_5716	0.88	+0.1
5,492,116	+		PP_5716	0.88	-0.5
5,492,237	+				+1.7
5,492,237	+				-0.4
5,492,269	-				+0.6
5,492,269	-				-0.2
5,492,269	-				+0.2
5,492,269	-				+0.8
5,492,334	+				+0.1
5,492,335	-				+1.1
5,492,335	-				-3.4
5,492,348	-				-0.6
5,492,348	-				-2.2
5,492,349	+				-0.9
5,492,349	+				+0.1
5,492,349	+				-0.8
5,492,349	+				+0.4
5,492,389	+				+0.5
5,492,390	-				+1.8
5,492,390	-				+0.2
5,492,390	-				+0.7
5,492,460	-				+0.3