Strain Fitness in Pseudomonas putida KT2440 around PP_5666

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,811,995	+		PP_4238	0.73	-0.4
4,812,017	+		PP_4238	0.80	+0.3
4,812,017	+		PP_4238	0.80	-1.8
4,812,078	+				-0.4
4,812,131	+				+0.1
4,812,150	-				-0.1
4,812,230	+				-0.1
4,812,452	+				-1.8
4,812,453	-				-0.5
4,812,523	+		PP_5665	0.21	+3.2
4,812,692	-				+0.9
4,813,050	+		PP_5666	0.32	+3.3
4,813,149	-		PP_5666	0.43	+1.0
4,813,168	+		PP_5666	0.46	+1.8
4,813,229	-		PP_5666	0.53	+0.7
4,813,353	-		PP_5666	0.67	+0.6
4,813,475	-		PP_5666	0.81	+0.5
4,813,632	-				-0.0
4,813,721	+		PP_5667	0.11	+0.4
4,813,721	+		PP_5667	0.11	-0.7
4,813,962	+		PP_5667	0.41	-1.1
4,814,203	+		PP_5667	0.71	+0.5
4,814,207	+		PP_5667	0.72	-1.0
4,814,241	-				+0.4
4,814,288	+		PP_5667	0.82	+0.5
4,814,349	-				+1.5
4,814,350	+				-3.0
4,814,486	+				-2.7
4,814,547	+				+0.8
4,814,547	+				-0.7