Strain Fitness in Pseudomonas putida KT2440 around PP_5521

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,773,316	-		PP_2426	0.30	-1.0
2,773,343	-		PP_2426	0.33	-0.4
2,773,343	-		PP_2426	0.33	-2.0
2,773,489	+		PP_2426	0.47	+0.2
2,773,489	+		PP_2426	0.47	-0.3
2,773,489	+		PP_2426	0.47	-3.8
2,773,982	-				+0.7
2,773,982	-				+1.2
2,774,011	+				-1.9
2,774,096	-				+0.7
2,774,111	-				-0.2
2,774,135	-				-2.6
2,774,352	+		PP_5521	0.14	+0.7
2,774,352	+		PP_5521	0.14	+0.1
2,774,352	+		PP_5521	0.14	-0.5
2,774,352	+		PP_5521	0.14	-1.1
2,774,353	-		PP_5521	0.14	+0.3
2,774,353	-		PP_5521	0.14	+0.4
2,774,353	-		PP_5521	0.14	-0.4
2,774,353	-		PP_5521	0.14	-0.5
2,774,371	+		PP_5521	0.16	-1.9
2,774,398	-		PP_5521	0.18	-0.8
2,774,398	-		PP_5521	0.18	-0.3
2,774,403	+		PP_5521	0.18	+0.1
2,774,403	+		PP_5521	0.18	-0.1
2,774,404	-		PP_5521	0.18	-0.4
2,774,422	-		PP_5521	0.19	+0.2
2,774,448	+		PP_5521	0.21	+0.1
2,774,448	+		PP_5521	0.21	+0.3
2,774,448	+		PP_5521	0.21	+1.0
2,774,448	+		PP_5521	0.21	-1.1
2,774,449	-		PP_5521	0.21	+1.0
2,774,496	+		PP_5521	0.25	-1.5
2,774,497	-		PP_5521	0.25	+0.9
2,774,497	-		PP_5521	0.25	-0.7
2,774,499	+		PP_5521	0.25	-1.1
2,774,843	+		PP_5521	0.51	+0.5
2,774,851	+		PP_5521	0.51	-1.7
2,774,851	+		PP_5521	0.51	-1.1
2,774,874	-		PP_5521	0.53	+0.8
2,775,118	+		PP_5521	0.71	+0.2
2,775,142	-		PP_5521	0.73	-1.0
2,775,405	+				-1.1
2,775,405	+				+0.3
2,775,427	-				+0.9
2,775,527	+				-0.4
2,775,527	+				-1.0
2,775,528	-				+3.0
2,775,867	+		PP_2428	0.17	+1.5
2,775,868	-		PP_2428	0.17	-0.1
2,775,868	-		PP_2428	0.17	+0.9
2,775,868	-		PP_2428	0.17	+1.1
2,776,136	+		PP_2428	0.39	+0.0
2,776,137	-		PP_2428	0.39	-0.2
2,776,337	+		PP_2428	0.56	-0.1
2,776,337	+		PP_2428	0.56	-0.3
2,776,337	+		PP_2428	0.56	-1.3
2,776,338	-		PP_2428	0.56	+0.4
2,776,338	-		PP_2428	0.56	-0.3
2,776,341	+		PP_2428	0.56	-0.2
2,776,342	-		PP_2428	0.56	-1.2
2,776,342	-		PP_2428	0.56	+0.6
2,776,383	+		PP_2428	0.59	-1.9
2,776,384	-		PP_2428	0.59	-0.2
2,776,389	+				-0.6
2,776,389	+		PP_2428	0.60	+0.3
2,776,389	+		PP_2428	0.60	+1.8
2,776,389	+		PP_2428	0.60	+0.1
2,776,390	-		PP_2428	0.60	+0.1
2,776,390	-		PP_2428	0.60	-2.3
2,776,390	-		PP_2428	0.60	-0.1
2,776,390	-		PP_2428	0.60	+1.0
2,776,392	-		PP_2428	0.60	+0.2
2,776,414	+		PP_2428	0.62	-0.8
2,776,414	+		PP_2428	0.62	+1.3
2,776,415	-		PP_2428	0.62	+0.6