Strain Fitness in Pseudomonas putida KT2440 around PP_5392

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
6,145,462	+				+0.5
6,145,463	-				-0.3
6,145,569	+		PP_5390	0.48	+1.7
6,145,569	+		PP_5390	0.48	+0.9
6,145,569	+		PP_5390	0.48	-1.6
6,145,570	-		PP_5390	0.49	+0.4
6,145,570	-		PP_5390	0.49	-1.4
6,145,570	-		PP_5390	0.49	-1.6
6,145,617	+		PP_5390	0.66	-0.4
6,145,637	+		PP_5390	0.73	+0.3
6,145,638	-		PP_5390	0.73	-0.6
6,145,712	-				+2.4
6,145,712	-				+0.5
6,145,929	-		PP_5391	0.33	+1.3
6,145,929	-		PP_5391	0.33	-0.6
6,145,929	-		PP_5391	0.33	-2.3
6,145,929	-		PP_5391	0.33	+0.1
6,146,204	+		PP_5391	0.80	+0.5
6,146,204	+		PP_5391	0.80	+0.3
6,146,204	+		PP_5391	0.80	+0.4
6,146,205	-		PP_5391	0.80	-0.5
6,146,205	-		PP_5391	0.80	-0.2
6,146,214	-		PP_5391	0.82	-1.1
6,146,215	+		PP_5391	0.82	+0.5
6,146,215	+		PP_5391	0.82	+0.1
6,146,216	-		PP_5391	0.82	+0.4
6,146,216	-		PP_5391	0.82	+0.5
6,146,330	-				-0.6
6,146,381	+				+1.8
6,146,381	+				+0.2
6,146,381	+				+1.9
6,146,381	+				+0.5
6,146,382	-				+0.0
6,146,387	+				+1.5
6,146,388	-				-0.5
6,146,400	-				-0.3
6,146,412	-				+1.0
6,146,424	+				-0.8
6,146,425	-				+1.4
6,146,425	-				-1.0
6,146,425	-				+1.5
6,146,442	-		PP_5392	0.11	-0.2
6,146,458	+		PP_5392	0.13	+0.4
6,146,459	-		PP_5392	0.13	+1.5
6,146,459	-		PP_5392	0.13	+2.0
6,146,459	-		PP_5392	0.13	+1.3
6,146,526	-		PP_5392	0.19	-1.6
6,146,526	-		PP_5392	0.19	+1.0
6,146,537	+		PP_5392	0.20	+1.1
6,146,538	-		PP_5392	0.21	+1.7
6,146,539	+		PP_5392	0.21	-0.6
6,146,541	+		PP_5392	0.21	+0.6
6,146,541	+		PP_5392	0.21	+1.4
6,146,542	-		PP_5392	0.21	+0.1
6,146,542	-		PP_5392	0.21	+0.9
6,146,542	-		PP_5392	0.21	+0.3
6,146,542	-		PP_5392	0.21	+1.9
6,146,593	+		PP_5392	0.26	+1.0
6,146,594	-		PP_5392	0.26	-0.1
6,146,594	-		PP_5392	0.26	-1.0
6,146,594	-		PP_5392	0.26	-0.3
6,146,765	+		PP_5392	0.43	+0.3
6,146,765	+		PP_5392	0.43	+0.9
6,146,765	+		PP_5392	0.43	+1.2
6,146,765	+		PP_5392	0.43	+1.6
6,146,765	+		PP_5392	0.43	+0.4
6,146,766	-		PP_5392	0.43	-0.6
6,146,766	-		PP_5392	0.43	+0.7
6,146,766	-		PP_5392	0.43	-0.9
6,146,766	-		PP_5392	0.43	+1.4
6,146,766	-		PP_5392	0.43	+0.5
6,146,817	+		PP_5392	0.48	+0.2
6,146,843	+		PP_5392	0.50	+1.6
6,146,845	+		PP_5392	0.51	-2.0
6,146,845	+		PP_5392	0.51	+1.3
6,146,845	+		PP_5392	0.51	+0.2
6,146,845	+		PP_5392	0.51	+0.7
6,146,845	+		PP_5392	0.51	-1.6
6,146,937	+		PP_5392	0.60	+0.3
6,146,937	+		PP_5392	0.60	+0.4
6,147,060	-		PP_5392	0.72	+0.0
6,147,162	+		PP_5392	0.82	+1.3
6,147,269	+				-0.2
6,147,323	+				+0.1
6,147,324	-				-0.4
6,147,324	-				+1.5
6,147,324	-				+1.9
6,147,324	-				+0.5
6,147,324	-				-0.0
6,147,399	+				+0.2
6,147,511	-				-0.5
6,147,511	-				-0.4
6,147,511	-				-0.6
6,147,521	-				+0.2
6,147,521	-				-1.4
6,147,556	-				-1.1
6,147,617	+				+0.6
6,147,617	+				-1.5
6,147,617	+				-1.7
6,147,703	-		PP_5393	0.43	-2.7
6,147,703	-		PP_5393	0.43	-0.6
6,147,816	+				+0.2
6,147,836	+				+0.3
6,147,836	+				-1.8
6,147,837	-				+0.3
6,147,857	+				-1.0
6,147,858	-				+0.3
6,147,858	-				-0.1
6,147,858	-				-1.7
6,147,908	+				-0.1
6,147,908	+				+2.3
6,147,909	-				+2.9
6,147,975	+				+0.2
6,148,059	-				-0.6
6,148,094	+				-0.2
6,148,094	+				+0.2
6,148,094	+				-0.6
6,148,095	-				-1.0
6,148,095	-				-0.5
6,148,137	+				-3.7
6,148,137	+				+0.6
6,148,137	+				+0.2
6,148,138	-				-1.3
6,148,138	-				-0.7
6,148,138	-				+0.9
6,148,138	-				+0.0
6,148,138	-				+1.0
6,148,138	-				-0.6
6,148,138	-				+2.0
6,148,214	+				-0.1
6,148,215	-				-1.7
6,148,215	-				-2.4
6,148,215	-				+1.5
6,148,215	-				+1.1
6,148,250	+				+0.8
6,148,250	+				+1.7
6,148,250	+				+0.0
6,148,250	+				-0.7
6,148,251	-				+0.3
6,148,262	-				-0.0
6,148,269	+				-0.3
6,148,269	+				+0.9
6,148,270	-				+0.3
6,148,293	-				-0.8
6,148,301	-				+0.4
6,148,309	-				-0.2