Strain Fitness in Pseudomonas putida KT2440 around PP_5259

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
6,003,425	-		PP_5258	0.66	+1.4
6,003,579	-		PP_5258	0.76	+1.9
6,003,579	-		PP_5258	0.76	-1.5
6,003,890	+				+0.5
6,003,890	+				-0.5
6,003,891	-				+0.2
6,003,949	+				+0.3
6,003,949	+				+0.1
6,003,949	+				-1.5
6,003,950	-				+0.9
6,003,987	-				-1.2
6,004,002	+				-1.7
6,004,002	+				+1.6
6,004,003	-				+0.5
6,004,003	-				+1.4
6,004,003	-				-2.0
6,004,003	-				-1.0
6,004,003	-				+1.9
6,004,003	-				-1.3
6,004,006	+				+1.1
6,004,007	-				-0.0
6,004,007	-				+0.0
6,004,022	+				-1.6
6,004,022	+				-0.0
6,004,023	-				+1.7
6,004,031	+				-0.2
6,004,032	-				-0.2
6,004,071	+				-0.6
6,004,071	+				+1.1
6,004,072	-				-1.5
6,004,088	+				-1.1
6,004,279	+		PP_5259	0.23	+1.8
6,004,317	+		PP_5259	0.27	+0.2
6,004,317	+		PP_5259	0.27	+1.4
6,004,317	+		PP_5259	0.27	+0.7
6,004,317	+		PP_5259	0.27	+1.0
6,004,317	+		PP_5259	0.27	-0.5
6,004,317	+		PP_5259	0.27	+1.5
6,004,317	+		PP_5259	0.27	-2.0
6,004,317	+		PP_5259	0.27	+0.0
6,004,317	+		PP_5259	0.27	-3.2
6,004,317	+		PP_5259	0.27	+1.0
6,004,317	+		PP_5259	0.27	+1.4
6,004,317	+		PP_5259	0.27	+0.4
6,004,317	+		PP_5259	0.27	-0.4
6,004,318	-		PP_5259	0.28	+0.7
6,004,318	-		PP_5259	0.28	-0.8
6,004,330	+		PP_5259	0.29	-0.3
6,004,330	+		PP_5259	0.29	-0.3
6,004,331	-		PP_5259	0.29	-0.1
6,004,342	+		PP_5259	0.30	-1.5
6,004,343	-		PP_5259	0.30	+3.5
6,004,343	-		PP_5259	0.30	-0.6
6,004,361	+		PP_5259	0.32	-0.8
6,004,361	+		PP_5259	0.32	-0.7
6,004,361	+		PP_5259	0.32	+1.3
6,004,362	-		PP_5259	0.33	-0.4
6,004,362	-		PP_5259	0.33	-1.0
6,004,362	-		PP_5259	0.33	+1.1
6,004,370	+		PP_5259	0.33	-0.9
6,004,370	+		PP_5259	0.33	-1.6
6,004,371	-		PP_5259	0.34	+0.4
6,004,516	+		PP_5259	0.50	+1.3
6,004,517	-		PP_5259	0.50	+0.6
6,004,517	-		PP_5259	0.50	+2.2
6,004,517	-		PP_5259	0.50	+1.7
6,004,720	+		PP_5259	0.73	+0.1
6,004,740	+		PP_5259	0.75	+1.9
6,004,740	+		PP_5259	0.75	+0.7
6,004,741	-		PP_5259	0.75	-0.9
6,004,747	+		PP_5259	0.76	-0.8
6,004,747	+		PP_5259	0.76	-0.7
6,004,747	+		PP_5259	0.76	+2.6
6,004,747	+		PP_5259	0.76	+0.3
6,004,747	+		PP_5259	0.76	+1.3
6,004,747	+		PP_5259	0.76	-0.0
6,004,747	+		PP_5259	0.76	+1.3
6,004,748	-		PP_5259	0.76	+1.1
6,004,748	-		PP_5259	0.76	-1.1
6,004,748	-		PP_5259	0.76	-0.6
6,004,748	-		PP_5259	0.76	+1.6
6,004,748	-		PP_5259	0.76	+1.9
6,004,748	-		PP_5259	0.76	+0.5
6,004,748	-		PP_5259	0.76	+0.5
6,004,748	-		PP_5259	0.76	+0.2
6,004,748	-		PP_5259	0.76	+0.6
6,004,749	+		PP_5259	0.76	+1.0
6,004,749	+		PP_5259	0.76	-0.7
6,004,749	+		PP_5259	0.76	-1.3
6,004,750	-		PP_5259	0.76	+0.0
6,004,801	+		PP_5259	0.82	+0.3
6,004,879	+				+1.4
6,004,880	-				-0.9
6,004,880	-				-0.9
6,004,889	-				+0.9
6,005,133	+				+2.5
6,005,208	-				-1.2
6,005,208	-				+0.0
6,005,229	-				+0.3
6,005,429	+				-0.4
6,005,429	+		PP_5260	0.21	-0.9
6,005,432	+		PP_5260	0.21	-1.4
6,005,433	-		PP_5260	0.21	+0.3
6,005,433	-		PP_5260	0.21	+0.7
6,005,433	-		PP_5260	0.21	+0.4
6,005,433	-		PP_5260	0.21	-0.9
6,005,744	+		PP_5260	0.43	+2.1