Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5253 and PP_5254 are separated by 40 nucleotides PP_5254 and PP_5255 are separated by 87 nucleotides PP_5255 and PP_5256 are separated by 320 nucleotides
PP_5253: PP_5253 - Arylesterase, at 5,997,231 to 5,998,049
_5253
PP_5254: PP_5254 - conserved protein of unknown function, at 5,998,090 to 5,998,428
_5254
PP_5255: PP_5255 - putative hydrolase, at 5,998,516 to 5,999,145
_5255
PP_5256: PP_5256 - Cyclic nucleotide-binding protein, at 5,999,466 to 6,000,893
_5256
Position (kb) 5998
5999
6000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5997.738 kb on - strand, within PP_5253 at 5997.739 kb on + strand, within PP_5253 at 5997.740 kb on - strand, within PP_5253 at 5997.842 kb on - strand, within PP_5253 at 5997.842 kb on - strand, within PP_5253 at 5998.012 kb on + strand at 5998.012 kb on + strand at 5998.012 kb on + strand at 5998.050 kb on - strand at 5998.055 kb on + strand at 5998.056 kb on - strand at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.357 kb on + strand, within PP_5254 at 5998.357 kb on + strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.518 kb on - strand at 5998.518 kb on - strand at 5998.541 kb on + strand at 5998.542 kb on - strand at 5998.786 kb on + strand, within PP_5255 at 5998.787 kb on - strand, within PP_5255 at 5998.788 kb on - strand, within PP_5255 at 5998.901 kb on + strand, within PP_5255 at 5998.901 kb on + strand, within PP_5255 at 5998.974 kb on + strand, within PP_5255 at 5998.974 kb on + strand, within PP_5255 at 5998.975 kb on - strand, within PP_5255 at 5998.975 kb on - strand, within PP_5255 at 5999.099 kb on - strand at 5999.129 kb on + strand at 5999.178 kb on - strand at 5999.233 kb on + strand at 5999.233 kb on + strand at 5999.234 kb on - strand at 5999.237 kb on + strand at 5999.356 kb on + strand at 5999.356 kb on + strand at 5999.426 kb on + strand at 5999.426 kb on + strand at 5999.426 kb on + strand at 5999.426 kb on + strand at 5999.427 kb on - strand at 5999.427 kb on - strand at 5999.427 kb on - strand at 5999.427 kb on - strand at 5999.427 kb on - strand at 5999.427 kb on - strand at 5999.427 kb on - strand at 5999.430 kb on - strand at 5999.430 kb on - strand at 5999.430 kb on - strand at 5999.430 kb on - strand at 5999.430 kb on - strand at 5999.430 kb on - strand at 5999.430 kb on - strand at 5999.432 kb on + strand at 5999.690 kb on - strand, within PP_5256 at 5999.737 kb on + strand, within PP_5256 at 5999.841 kb on + strand, within PP_5256 at 6000.142 kb on + strand, within PP_5256
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,997,738 - PP_5253 0.62 +0.4 5,997,739 + PP_5253 0.62 +0.4 5,997,740 - PP_5253 0.62 +2.4 5,997,842 - PP_5253 0.75 +0.5 5,997,842 - PP_5253 0.75 -1.0 5,998,012 + +0.1 5,998,012 + +0.2 5,998,012 + -0.4 5,998,050 - -0.4 5,998,055 + +0.2 5,998,056 - -0.8 5,998,139 + PP_5254 0.14 +0.4 5,998,139 + PP_5254 0.14 -0.2 5,998,139 + PP_5254 0.14 -0.9 5,998,139 + PP_5254 0.14 +0.5 5,998,139 + PP_5254 0.14 +0.9 5,998,140 - PP_5254 0.15 +1.5 5,998,140 - PP_5254 0.15 +0.4 5,998,140 - PP_5254 0.15 -0.3 5,998,274 + PP_5254 0.54 -1.2 5,998,274 + PP_5254 0.54 +0.0 5,998,274 + PP_5254 0.54 -0.3 5,998,357 + PP_5254 0.79 +0.6 5,998,357 + PP_5254 0.79 +0.4 5,998,358 - PP_5254 0.79 -0.4 5,998,358 - PP_5254 0.79 -0.3 5,998,358 - PP_5254 0.79 -0.5 5,998,358 - PP_5254 0.79 -1.5 5,998,358 - PP_5254 0.79 +0.2 5,998,464 - -0.1 5,998,464 - -0.0 5,998,464 - +0.5 5,998,464 - +0.1 5,998,464 - -0.1 5,998,518 - +0.5 5,998,518 - +0.8 5,998,541 + -0.8 5,998,542 - +1.0 5,998,786 + PP_5255 0.43 +0.5 5,998,787 - PP_5255 0.43 -3.8 5,998,788 - PP_5255 0.43 -0.1 5,998,901 + PP_5255 0.61 -0.4 5,998,901 + PP_5255 0.61 +1.7 5,998,974 + PP_5255 0.73 -0.9 5,998,974 + PP_5255 0.73 +0.4 5,998,975 - PP_5255 0.73 -1.3 5,998,975 - PP_5255 0.73 -0.1 5,999,099 - -0.5 5,999,129 + +1.0 5,999,178 - +1.0 5,999,233 + -1.1 5,999,233 + -1.0 5,999,234 - +0.2 5,999,237 + -0.2 5,999,356 + +0.3 5,999,356 + +0.2 5,999,426 + +0.3 5,999,426 + -0.3 5,999,426 + -1.7 5,999,426 + +0.9 5,999,427 - +2.1 5,999,427 - -0.5 5,999,427 - +1.1 5,999,427 - -1.8 5,999,427 - -2.6 5,999,427 - +1.4 5,999,427 - -0.9 5,999,430 - -0.4 5,999,430 - -0.5 5,999,430 - +0.2 5,999,430 - +0.3 5,999,430 - +0.0 5,999,430 - -0.8 5,999,430 - +0.4 5,999,432 + +1.8 5,999,690 - PP_5256 0.16 +0.5 5,999,737 + PP_5256 0.19 -1.1 5,999,841 + PP_5256 0.26 -0.1 6,000,142 + PP_5256 0.47 +0.3
Or see this region's nucleotide sequence