Strain Fitness in Pseudomonas putida KT2440 around PP_5129

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5128 and PP_5129 are separated by 67 nucleotidesPP_5129 and PP_5130 are separated by 387 nucleotides PP_5128: PP_5128 - Dihydroxy-acid dehydratase, at 5,849,296 to 5,851,137 _5128 PP_5129: PP_5129 - conserved protein of unknown function, at 5,851,205 to 5,852,293 _5129 PP_5130: PP_5130 - phosphoethanolamine/phosphocholine phosphatase, at 5,852,681 to 5,853,736 _5130 Position (kb) 5851 5852 5853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5850.250 kb on + strand, within PP_5128at 5850.535 kb on + strand, within PP_5128at 5850.535 kb on + strand, within PP_5128at 5850.536 kb on - strand, within PP_5128at 5850.536 kb on - strand, within PP_5128at 5850.565 kb on + strand, within PP_5128at 5850.565 kb on + strand, within PP_5128at 5850.565 kb on + strand, within PP_5128at 5850.566 kb on - strand, within PP_5128at 5850.781 kb on + strand, within PP_5128at 5850.929 kb on + strand, within PP_5128at 5850.945 kb on + strand, within PP_5128at 5851.049 kb on + strandat 5851.069 kb on + strandat 5851.069 kb on + strandat 5851.069 kb on + strandat 5851.070 kb on - strandat 5851.070 kb on - strandat 5851.070 kb on - strandat 5851.070 kb on - strandat 5851.110 kb on + strandat 5851.110 kb on + strandat 5851.147 kb on - strandat 5851.471 kb on - strand, within PP_5129at 5851.471 kb on - strand, within PP_5129at 5851.471 kb on - strand, within PP_5129at 5851.494 kb on + strand, within PP_5129at 5851.535 kb on - strand, within PP_5129at 5851.581 kb on + strand, within PP_5129at 5851.581 kb on + strand, within PP_5129at 5851.582 kb on - strand, within PP_5129at 5851.597 kb on + strand, within PP_5129at 5851.598 kb on - strand, within PP_5129at 5851.598 kb on - strand, within PP_5129at 5851.598 kb on - strand, within PP_5129at 5851.601 kb on + strand, within PP_5129at 5851.602 kb on - strand, within PP_5129at 5851.602 kb on - strand, within PP_5129at 5851.635 kb on + strand, within PP_5129at 5851.636 kb on - strand, within PP_5129at 5851.636 kb on - strand, within PP_5129at 5851.636 kb on - strand, within PP_5129at 5851.636 kb on - strand, within PP_5129at 5851.636 kb on - strand, within PP_5129at 5851.639 kb on + strand, within PP_5129at 5851.639 kb on + strandat 5851.639 kb on + strand, within PP_5129at 5851.640 kb on - strand, within PP_5129at 5851.640 kb on - strand, within PP_5129at 5851.640 kb on - strand, within PP_5129at 5851.706 kb on + strand, within PP_5129at 5851.706 kb on + strand, within PP_5129at 5851.706 kb on + strand, within PP_5129at 5851.957 kb on + strand, within PP_5129at 5852.107 kb on + strand, within PP_5129at 5852.126 kb on - strand, within PP_5129at 5852.130 kb on - strand, within PP_5129at 5852.157 kb on + strand, within PP_5129at 5852.167 kb on - strand, within PP_5129at 5852.167 kb on - strand, within PP_5129at 5852.231 kb on - strandat 5852.240 kb on - strandat 5852.281 kb on + strandat 5852.281 kb on + strandat 5852.294 kb on + strandat 5852.295 kb on - strandat 5852.295 kb on - strandat 5852.295 kb on - strandat 5852.300 kb on + strandat 5852.318 kb on + strandat 5852.318 kb on + strandat 5852.319 kb on - strandat 5852.319 kb on - strandat 5852.319 kb on - strandat 5852.384 kb on + strandat 5852.385 kb on - strandat 5852.555 kb on + strandat 5852.555 kb on + strandat 5852.556 kb on - strandat 5852.556 kb on - strandat 5852.556 kb on - strandat 5852.626 kb on + strandat 5852.626 kb on + strandat 5852.626 kb on + strandat 5852.626 kb on + strandat 5852.627 kb on - strandat 5852.627 kb on - strandat 5852.675 kb on + strandat 5852.676 kb on - strandat 5852.796 kb on + strand, within PP_5130at 5852.796 kb on + strand, within PP_5130at 5852.797 kb on - strand, within PP_5130at 5852.814 kb on - strand, within PP_5130at 5852.865 kb on + strand, within PP_5130at 5852.865 kb on + strand, within PP_5130at 5852.865 kb on + strand, within PP_5130at 5852.925 kb on + strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.929 kb on + strand, within PP_5130at 5852.930 kb on - strand, within PP_5130at 5852.930 kb on - strand, within PP_5130at 5852.930 kb on - strand, within PP_5130at 5852.980 kb on - strand, within PP_5130at 5853.004 kb on + strand, within PP_5130at 5853.018 kb on + strand, within PP_5130at 5853.018 kb on + strand, within PP_5130at 5853.019 kb on - strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.121 kb on - strand, within PP_5130at 5853.121 kb on - strand, within PP_5130at 5853.121 kb on - strand, within PP_5130at 5853.126 kb on + strand, within PP_5130at 5853.126 kb on + strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.216 kb on + strand, within PP_5130at 5853.216 kb on + strand, within PP_5130at 5853.216 kb on + strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.286 kb on - strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.289 kb on - strand, within PP_5130at 5853.289 kb on - strand, within PP_5130

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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5,850,250 + PP_5128 0.52 +1.3
5,850,535 + PP_5128 0.67 +0.2
5,850,535 + PP_5128 0.67 +0.9
5,850,536 - PP_5128 0.67 +0.0
5,850,536 - PP_5128 0.67 +1.1
5,850,565 + PP_5128 0.69 -0.2
5,850,565 + PP_5128 0.69 +1.4
5,850,565 + PP_5128 0.69 +0.2
5,850,566 - PP_5128 0.69 -0.4
5,850,781 + PP_5128 0.81 -1.5
5,850,929 + PP_5128 0.89 +2.9
5,850,945 + PP_5128 0.90 +0.5
5,851,049 + +1.1
5,851,069 + -1.6
5,851,069 + -0.4
5,851,069 + -2.6
5,851,070 - +0.7
5,851,070 - -0.1
5,851,070 - +0.5
5,851,070 - +0.9
5,851,110 + +1.9
5,851,110 + -1.0
5,851,147 - +0.5
5,851,471 - PP_5129 0.24 +2.1
5,851,471 - PP_5129 0.24 +1.1
5,851,471 - PP_5129 0.24 +0.5
5,851,494 + PP_5129 0.27 +0.5
5,851,535 - PP_5129 0.30 +0.7
5,851,581 + PP_5129 0.35 +0.1
5,851,581 + PP_5129 0.35 +0.0
5,851,582 - PP_5129 0.35 +0.6
5,851,597 + PP_5129 0.36 -0.6
5,851,598 - PP_5129 0.36 -0.1
5,851,598 - PP_5129 0.36 +0.6
5,851,598 - PP_5129 0.36 +1.3
5,851,601 + PP_5129 0.36 -0.4
5,851,602 - PP_5129 0.36 +2.8
5,851,602 - PP_5129 0.36 +1.7
5,851,635 + PP_5129 0.39 -1.8
5,851,636 - PP_5129 0.40 +0.8
5,851,636 - PP_5129 0.40 -0.2
5,851,636 - PP_5129 0.40 +0.8
5,851,636 - PP_5129 0.40 +0.2
5,851,636 - PP_5129 0.40 +1.6
5,851,639 + PP_5129 0.40 +0.3
5,851,639 + +2.0
5,851,639 + PP_5129 0.40 +0.4
5,851,640 - PP_5129 0.40 +1.5
5,851,640 - PP_5129 0.40 -0.2
5,851,640 - PP_5129 0.40 -1.9
5,851,706 + PP_5129 0.46 -0.1
5,851,706 + PP_5129 0.46 +1.1
5,851,706 + PP_5129 0.46 +1.9
5,851,957 + PP_5129 0.69 -1.8
5,852,107 + PP_5129 0.83 -0.6
5,852,126 - PP_5129 0.85 +1.2
5,852,130 - PP_5129 0.85 +0.3
5,852,157 + PP_5129 0.87 +0.5
5,852,167 - PP_5129 0.88 +2.1
5,852,167 - PP_5129 0.88 +0.9
5,852,231 - +2.0
5,852,240 - +0.8
5,852,281 + +0.4
5,852,281 + +0.5
5,852,294 + -0.2
5,852,295 - -0.4
5,852,295 - +1.2
5,852,295 - +0.3
5,852,300 + -0.7
5,852,318 + -0.8
5,852,318 + -1.2
5,852,319 - +1.3
5,852,319 - -0.3
5,852,319 - -1.7
5,852,384 + -0.9
5,852,385 - -0.7
5,852,555 + -0.4
5,852,555 + -1.3
5,852,556 - +0.3
5,852,556 - +0.2
5,852,556 - -0.1
5,852,626 + +0.3
5,852,626 + +0.1
5,852,626 + -0.1
5,852,626 + +1.1
5,852,627 - -0.8
5,852,627 - -0.3
5,852,675 + +0.6
5,852,676 - -0.3
5,852,796 + PP_5130 0.11 +1.5
5,852,796 + PP_5130 0.11 -0.2
5,852,797 - PP_5130 0.11 +0.6
5,852,814 - PP_5130 0.13 -1.1
5,852,865 + PP_5130 0.17 -1.4
5,852,865 + PP_5130 0.17 +0.3
5,852,865 + PP_5130 0.17 +0.1
5,852,925 + PP_5130 0.23 +1.3
5,852,926 - PP_5130 0.23 -0.8
5,852,926 - PP_5130 0.23 -0.1
5,852,926 - PP_5130 0.23 -0.2
5,852,926 - PP_5130 0.23 +0.6
5,852,926 - PP_5130 0.23 -0.3
5,852,926 - PP_5130 0.23 -0.5
5,852,926 - PP_5130 0.23 +1.1
5,852,929 + PP_5130 0.23 -0.2
5,852,930 - PP_5130 0.24 -1.1
5,852,930 - PP_5130 0.24 +1.3
5,852,930 - PP_5130 0.24 -0.9
5,852,980 - PP_5130 0.28 -0.8
5,853,004 + PP_5130 0.31 -0.3
5,853,018 + PP_5130 0.32 +0.0
5,853,018 + PP_5130 0.32 +1.8
5,853,019 - PP_5130 0.32 +0.5
5,853,120 + PP_5130 0.42 -0.4
5,853,120 + PP_5130 0.42 +0.0
5,853,120 + PP_5130 0.42 +1.1
5,853,120 + PP_5130 0.42 +1.0
5,853,121 - PP_5130 0.42 +0.5
5,853,121 - PP_5130 0.42 +0.2
5,853,121 - PP_5130 0.42 +0.1
5,853,126 + PP_5130 0.42 +0.5
5,853,126 + PP_5130 0.42 +0.3
5,853,127 - PP_5130 0.42 +2.5
5,853,127 - PP_5130 0.42 -2.1
5,853,127 - PP_5130 0.42 +0.8
5,853,127 - PP_5130 0.42 -0.2
5,853,127 - PP_5130 0.42 -1.5
5,853,127 - PP_5130 0.42 -3.2
5,853,127 - PP_5130 0.42 -1.2
5,853,183 + PP_5130 0.48 +0.1
5,853,183 + PP_5130 0.48 +1.9
5,853,183 + PP_5130 0.48 -0.7
5,853,183 + PP_5130 0.48 -2.1
5,853,183 + PP_5130 0.48 +0.2
5,853,216 + PP_5130 0.51 +0.2
5,853,216 + PP_5130 0.51 +0.8
5,853,216 + PP_5130 0.51 +0.0
5,853,217 - PP_5130 0.51 +0.6
5,853,217 - PP_5130 0.51 +0.9
5,853,217 - PP_5130 0.51 -0.4
5,853,217 - PP_5130 0.51 -0.8
5,853,217 - PP_5130 0.51 +1.5
5,853,286 - PP_5130 0.57 +1.8
5,853,288 + PP_5130 0.57 -0.3
5,853,288 + PP_5130 0.57 +2.2
5,853,288 + PP_5130 0.57 +2.0
5,853,288 + PP_5130 0.57 -0.4
5,853,289 - PP_5130 0.58 +0.8
5,853,289 - PP_5130 0.58 -0.2

Or see this region's nucleotide sequence