Strain Fitness in Pseudomonas putida KT2440 around PP_5009

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,705,275	+		PP_5007	0.88	-1.5
5,705,279	-		PP_5007	0.88	-1.4
5,705,280	-		PP_5007	0.88	-0.4
5,705,280	-		PP_5007	0.88	+0.7
5,705,384	+				-1.6
5,705,470	-		PP_5008	0.21	+1.7
5,705,703	-		PP_5008	0.76	-3.5
5,705,863	+				+0.8
5,705,863	+				+1.0
5,705,864	-				-1.1
5,705,895	+				-1.4
5,705,896	-				+0.7
5,705,896	-				+0.8
5,705,916	+				+0.5
5,705,916	+				+0.6
5,705,916	+				-0.8
5,705,916	+				-0.9
5,705,916	+				-0.9
5,705,916	+				+1.3
5,705,917	-				+1.5
5,705,917	-				+0.3
5,705,917	-				+0.9
5,705,917	-				+1.9
5,705,917	-				+0.5
5,705,917	-				+0.6
5,705,918	+				-0.8
5,705,918	+				+0.6
5,705,918	+				-1.1
5,705,919	-				+0.8
5,705,919	-				-1.4
5,705,920	+				-0.9
5,705,920	+				-1.2
5,705,920	+				-0.4
5,705,920	+				+1.0
5,705,993	+				-0.9
5,706,071	+				+0.3
5,706,257	+				-1.0
5,706,257	+				+0.6
5,706,258	-				+1.4
5,706,258	-				-1.1
5,706,382	-				-0.5
5,706,401	+				-0.6
5,706,402	-				+0.8
5,706,556	+		PP_5009	0.12	+0.9
5,706,556	+		PP_5009	0.12	+1.8
5,706,556	+		PP_5009	0.12	+0.3
5,706,557	-		PP_5009	0.12	+0.2
5,706,602	+		PP_5009	0.13	-0.5
5,706,602	+		PP_5009	0.13	+1.1
5,706,656	+		PP_5009	0.14	+1.7
5,706,656	+		PP_5009	0.14	-0.4
5,706,656	+		PP_5009	0.14	+2.0
5,706,657	-		PP_5009	0.14	-0.1
5,706,657	-		PP_5009	0.14	-1.5
5,706,657	-		PP_5009	0.14	-0.0
5,706,657	-		PP_5009	0.14	-0.2
5,706,657	-		PP_5009	0.14	+1.6
5,706,657	-		PP_5009	0.14	+0.2
5,706,771	-		PP_5009	0.17	+0.0
5,706,941	+		PP_5009	0.20	+1.2
5,706,941	+		PP_5009	0.20	+0.7
5,706,942	-		PP_5009	0.20	+0.7
5,706,942	-		PP_5009	0.20	+0.0
5,706,959	-		PP_5009	0.20	+1.0
5,706,959	-		PP_5009	0.20	+0.3
5,707,051	+		PP_5009	0.22	-2.8
5,707,129	-		PP_5009	0.24	+1.8
5,707,139	-		PP_5009	0.24	-0.8
5,707,193	+		PP_5009	0.25	+0.5
5,707,194	-		PP_5009	0.25	-0.2
5,707,194	-		PP_5009	0.25	-0.8
5,707,194	-		PP_5009	0.25	-0.9
5,707,433	-		PP_5009	0.30	-1.1
5,707,433	-		PP_5009	0.30	+0.8
5,707,442	-		PP_5009	0.31	+2.1
5,707,442	-		PP_5009	0.31	+0.6
5,707,513	+		PP_5009	0.32	-0.2
5,707,744	+		PP_5009	0.37	-1.0
5,707,745	-		PP_5009	0.37	+0.6
5,707,745	-		PP_5009	0.37	+0.9
5,707,829	+		PP_5009	0.39	+2.9
5,707,829	+		PP_5009	0.39	-0.2
5,707,829	+		PP_5009	0.39	-1.2
5,707,829	+		PP_5009	0.39	-0.4
5,707,830	-		PP_5009	0.39	-0.4
5,707,830	-		PP_5009	0.39	-0.6
5,707,864	+		PP_5009	0.40	+0.6
5,707,909	-		PP_5009	0.40	+1.0
5,707,946	+		PP_5009	0.41	+1.5
5,708,055	-		PP_5009	0.44	+1.4
5,708,055	-		PP_5009	0.44	+0.2
5,708,264	+		PP_5009	0.48	-0.7
5,708,265	-		PP_5009	0.48	+0.3
5,708,265	-		PP_5009	0.48	+0.6
5,708,340	+		PP_5009	0.50	+0.6
5,708,460	-		PP_5009	0.52	-0.8
5,708,460	-		PP_5009	0.52	-0.9
5,708,590	+		PP_5009	0.55	-1.9
5,708,590	+		PP_5009	0.55	+0.9
5,708,591	-		PP_5009	0.55	-0.2
5,708,591	-		PP_5009	0.55	+0.4
5,708,591	-		PP_5009	0.55	+0.9
5,708,591	-		PP_5009	0.55	+0.4
5,708,591	-		PP_5009	0.55	-0.1
5,708,591	-		PP_5009	0.55	-0.1
5,708,611	+		PP_5009	0.55	+0.0
5,708,611	+		PP_5009	0.55	-1.1
5,708,612	-		PP_5009	0.55	-0.3
5,708,612	-		PP_5009	0.55	-0.2
5,708,612	-		PP_5009	0.55	+1.8
5,708,612	-		PP_5009	0.55	+0.2
5,708,635	+		PP_5009	0.56	+1.3
5,708,636	-				+0.6
5,708,636	-		PP_5009	0.56	+0.5
5,708,636	-		PP_5009	0.56	-0.1
5,708,636	-		PP_5009	0.56	-0.2
5,708,910	+		PP_5009	0.61	+0.1
5,708,959	+		PP_5009	0.63	-0.5
5,708,960	-		PP_5009	0.63	-0.9
5,708,960	-		PP_5009	0.63	+2.2
5,708,960	-		PP_5009	0.63	+1.0
5,708,981	-		PP_5009	0.63	+1.4
5,708,981	-		PP_5009	0.63	-2.0
5,709,152	+		PP_5009	0.67	+0.2
5,709,152	+		PP_5009	0.67	-0.9
5,709,152	+		PP_5009	0.67	+1.3
5,709,230	-		PP_5009	0.68	-0.3
5,709,350	+		PP_5009	0.71	-1.7
5,709,350	+		PP_5009	0.71	+0.2
5,709,358	+		PP_5009	0.71	-0.9
5,709,358	+		PP_5009	0.71	+0.6
5,709,358	+		PP_5009	0.71	-1.2
5,709,358	+		PP_5009	0.71	+1.6
5,709,358	+		PP_5009	0.71	+1.3
5,709,359	-		PP_5009	0.71	+2.1
5,709,359	-		PP_5009	0.71	-0.4
5,709,359	-		PP_5009	0.71	+0.8
5,709,359	-		PP_5009	0.71	-1.2
5,709,497	+		PP_5009	0.74	+0.5
5,709,568	+		PP_5009	0.75	+0.3
5,709,665	+		PP_5009	0.77	-1.1
5,709,666	-		PP_5009	0.77	-0.2
5,709,733	-		PP_5009	0.79	+1.5
5,709,772	+		PP_5009	0.80	-1.6
5,709,772	+		PP_5009	0.80	+0.7
5,709,772	+		PP_5009	0.80	+1.3
5,709,773	-		PP_5009	0.80	-0.6
5,709,773	-		PP_5009	0.80	+0.5
5,709,823	+		PP_5009	0.81	-0.7
5,709,824	-		PP_5009	0.81	+0.1
5,709,824	-		PP_5009	0.81	-0.0
5,709,827	+		PP_5009	0.81	+0.1
5,709,827	+		PP_5009	0.81	-0.8
5,709,827	+		PP_5009	0.81	+0.3
5,709,828	-		PP_5009	0.81	+0.3
5,710,463	+				+1.3
5,710,464	-				-0.2
5,710,464	-				-0.3
5,710,481	-				-3.1
5,710,481	-				+1.5
5,710,616	+				-0.6
5,710,616	+				-1.2
5,710,616	+				+0.2
5,710,617	-				+0.6
5,710,943	+		PP_5010	0.54	-1.9
5,711,064	-				-0.8