Strain Fitness in Pseudomonas putida KT2440 around PP_4978

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,669,521	+				-1.6
5,669,521	+				-1.7
5,669,521	+				-0.0
5,669,662	+		PP_4977	0.16	-0.1
5,669,662	+		PP_4977	0.16	+0.8
5,669,662	+		PP_4977	0.16	+2.5
5,669,662	+		PP_4977	0.16	-0.4
5,669,662	+		PP_4977	0.16	-0.7
5,669,663	-		PP_4977	0.16	-0.8
5,669,663	-		PP_4977	0.16	-0.5
5,669,663	-		PP_4977	0.16	+0.2
5,669,663	-		PP_4977	0.16	+0.5
5,669,663	-		PP_4977	0.16	-2.1
5,669,663	-		PP_4977	0.16	-1.7
5,669,663	-		PP_4977	0.16	-1.1
5,669,664	+		PP_4977	0.16	-3.2
5,669,689	+		PP_4977	0.19	+1.3
5,669,689	+		PP_4977	0.19	+1.0
5,669,690	-		PP_4977	0.19	+1.7
5,669,690	-		PP_4977	0.19	+1.4
5,669,759	+		PP_4977	0.26	-2.7
5,669,759	+		PP_4977	0.26	-0.1
5,669,759	+		PP_4977	0.26	+1.3
5,669,760	-		PP_4977	0.27	-0.2
5,669,828	-		PP_4977	0.34	-0.1
5,669,911	+		PP_4977	0.44	-0.4
5,669,911	+		PP_4977	0.44	+0.3
5,669,912	-		PP_4977	0.44	+0.5
5,669,912	-		PP_4977	0.44	-1.5
5,669,912	-		PP_4977	0.44	+0.0
5,670,076	+		PP_4977	0.62	-1.3
5,670,077	-		PP_4977	0.62	-0.7
5,670,077	-		PP_4977	0.62	-0.2
5,670,097	+		PP_4977	0.65	-1.9
5,670,098	-		PP_4977	0.65	+0.1
5,670,098	-		PP_4977	0.65	-0.6
5,670,098	-		PP_4977	0.65	+0.9
5,670,098	-		PP_4977	0.65	-0.3
5,670,103	+		PP_4977	0.65	+1.0
5,670,103	+		PP_4977	0.65	-0.2
5,670,175	+		PP_4977	0.73	+0.8
5,670,175	+		PP_4977	0.73	-1.7
5,670,176	-		PP_4977	0.73	+1.2
5,670,176	-		PP_4977	0.73	+0.6
5,670,176	-		PP_4977	0.73	-0.4
5,670,250	+		PP_4977	0.82	-0.5
5,670,250	+		PP_4977	0.82	+1.0
5,670,250	+		PP_4977	0.82	+0.6
5,670,349	+				+0.7
5,670,349	+				-0.5
5,670,349	+				-0.0
5,670,349	+				-1.7
5,670,350	-				-0.1
5,670,350	-				-1.0
5,670,350	-				+0.1
5,670,350	-				+0.5
5,670,434	-				+1.5
5,670,444	+				+0.0
5,670,445	-				+0.9
5,670,458	+				-0.7
5,670,459	-				+0.6
5,670,459	-				-0.9
5,670,464	-				+2.9
5,670,539	+				+1.4
5,670,539	+				+0.2
5,670,539	+				-0.1
5,670,539	+				-0.5
5,670,539	+				+0.7
5,670,540	-				+1.0
5,670,540	-				+2.5
5,670,540	-				+0.8
5,670,542	-				+0.9
5,670,542	-				+0.4
5,670,542	-				-0.1
5,670,542	-				+0.0
5,670,565	+				+0.4
5,670,566	-				+2.4
5,670,566	-				+0.1
5,670,670	+		PP_4978	0.16	+1.6
5,670,671	-		PP_4978	0.16	+1.4
5,670,780	-		PP_4978	0.26	+0.3
5,670,780	-		PP_4978	0.26	-0.2
5,670,928	+		PP_4978	0.40	+1.2
5,670,928	+		PP_4978	0.40	+0.0
5,671,067	-		PP_4978	0.53	+1.1
5,671,088	-		PP_4978	0.55	+0.8
5,671,168	+		PP_4978	0.62	+2.7
5,671,168	+		PP_4978	0.62	+3.1
5,671,315	+		PP_4978	0.75	+0.7
5,671,315	+		PP_4978	0.75	+2.3
5,671,315	+		PP_4978	0.75	+1.7
5,671,316	-		PP_4978	0.76	+1.3
5,671,316	-		PP_4978	0.76	+1.6
5,671,375	+		PP_4978	0.81	-0.0
5,671,375	+		PP_4978	0.81	+0.8
5,671,375	+		PP_4978	0.81	-0.4
5,671,376	-		PP_4978	0.81	+0.5
5,671,376	-		PP_4978	0.81	+0.3
5,671,384	+		PP_4978	0.82	+0.0
5,671,462	+		PP_4978	0.89	+1.0
5,671,515	-				-0.2
5,671,718	-				+0.2
5,671,740	-				+0.1
5,671,759	+				+0.3
5,671,759	+				+1.0
5,671,853	+		PP_4979	0.13	+0.2
5,671,853	+		PP_4979	0.13	+0.5
5,671,853	+		PP_4979	0.13	-0.1
5,671,853	+		PP_4979	0.13	-0.3
5,671,854	-		PP_4979	0.13	-1.0
5,671,854	-		PP_4979	0.13	-1.3
5,671,854	-		PP_4979	0.13	+2.0
5,671,893	-		PP_4979	0.18	-0.0
5,671,893	-		PP_4979	0.18	+0.6
5,672,036	+		PP_4979	0.36	-0.2
5,672,037	-		PP_4979	0.36	+0.9
5,672,045	+		PP_4979	0.37	+0.1
5,672,045	+		PP_4979	0.37	+0.7
5,672,045	+		PP_4979	0.37	-1.7
5,672,045	+		PP_4979	0.37	+1.0
5,672,046	-		PP_4979	0.37	+0.9
5,672,046	-		PP_4979	0.37	-0.5
5,672,046	-		PP_4979	0.37	-1.6
5,672,218	+		PP_4979	0.59	-0.2
5,672,218	+		PP_4979	0.59	+0.2
5,672,218	+		PP_4979	0.59	-0.6
5,672,219	-		PP_4979	0.59	+0.1
5,672,219	-		PP_4979	0.59	-0.1
5,672,294	+		PP_4979	0.69	+0.3
5,672,295	-		PP_4979	0.69	+0.2
5,672,347	-		PP_4979	0.76	+0.1
5,672,367	-		PP_4979	0.78	+0.0
5,672,454	-		PP_4979	0.89	+0.6
5,672,474	+				+0.4
5,672,476	+				-0.6
5,672,476	+				-0.8
5,672,477	-				-0.8
5,672,546	+				-0.3
5,672,546	+				+1.2
5,672,549	-				-2.6
5,672,549	-				-2.2