Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4966 and PP_4967 are separated by 18 nucleotides PP_4967 and PP_4968 are separated by 228 nucleotides
PP_4966: PP_4966 - transcriptional regulator of methionine metabolism, at 5,657,946 to 5,658,938
_4966
PP_4967: PP_4967 - methionine adenosyltransferase, at 5,658,957 to 5,660,147
_4967
PP_4968: PP_4968 - DNA ligase B, at 5,660,376 to 5,662,076
_4968
Position (kb) 5658
5659
5660
5661 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5658.034 kb on + strand at 5658.034 kb on + strand at 5658.180 kb on + strand, within PP_4966 at 5658.180 kb on + strand, within PP_4966 at 5658.533 kb on + strand, within PP_4966 at 5658.861 kb on + strand at 5658.861 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5660.146 kb on - strand at 5660.211 kb on + strand at 5660.294 kb on + strand at 5660.295 kb on - strand at 5660.295 kb on - strand at 5660.295 kb on - strand at 5660.338 kb on - strand at 5660.382 kb on + strand at 5660.383 kb on - strand at 5660.404 kb on + strand at 5660.405 kb on - strand at 5660.405 kb on - strand at 5660.520 kb on + strand at 5660.520 kb on + strand at 5660.520 kb on + strand at 5660.536 kb on + strand at 5660.536 kb on + strand at 5660.537 kb on - strand at 5660.560 kb on - strand, within PP_4968 at 5660.779 kb on - strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.919 kb on + strand, within PP_4968 at 5660.919 kb on + strand, within PP_4968 at 5660.920 kb on - strand, within PP_4968 at 5660.920 kb on - strand, within PP_4968 at 5661.127 kb on - strand, within PP_4968
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,658,034 + -0.8 5,658,034 + -0.2 5,658,180 + PP_4966 0.24 +1.8 5,658,180 + PP_4966 0.24 +0.4 5,658,533 + PP_4966 0.59 -0.3 5,658,861 + -0.7 5,658,861 + +1.1 5,658,925 + -1.2 5,658,925 + +2.0 5,658,925 + +0.9 5,658,925 + -0.6 5,658,925 + -1.2 5,660,146 - +4.8 5,660,211 + +1.4 5,660,294 + -0.5 5,660,295 - -2.1 5,660,295 - -0.3 5,660,295 - -0.1 5,660,338 - -0.5 5,660,382 + -0.6 5,660,383 - +1.1 5,660,404 + +0.8 5,660,405 - +0.2 5,660,405 - -0.4 5,660,520 + +1.6 5,660,520 + -0.0 5,660,520 + +0.6 5,660,536 + -0.1 5,660,536 + -0.4 5,660,537 - -0.4 5,660,560 - PP_4968 0.11 -1.0 5,660,779 - PP_4968 0.24 +0.1 5,660,824 + PP_4968 0.26 -0.7 5,660,824 + PP_4968 0.26 -1.1 5,660,824 + PP_4968 0.26 +1.9 5,660,824 + PP_4968 0.26 +1.5 5,660,919 + PP_4968 0.32 +0.9 5,660,919 + PP_4968 0.32 -0.7 5,660,920 - PP_4968 0.32 +1.5 5,660,920 - PP_4968 0.32 -1.0 5,661,127 - PP_4968 0.44 +0.9
Or see this region's nucleotide sequence