Strain Fitness in Pseudomonas putida KT2440 around PP_4919

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,590,518	+		PP_4917	0.74	-2.1
5,590,518	+		PP_4917	0.74	-2.4
5,590,518	+		PP_4917	0.74	-1.3
5,590,519	-		PP_4917	0.74	-0.5
5,590,519	-		PP_4917	0.74	-2.5
5,590,519	-		PP_4917	0.74	-1.7
5,590,519	-		PP_4917	0.74	-2.5
5,590,519	-		PP_4917	0.74	-0.9
5,590,519	-		PP_4917	0.74	-1.7
5,590,756	+				+0.4
5,590,756	+				+0.7
5,590,757	-				+1.1
5,590,757	-				+0.6
5,590,757	-				+0.9
5,590,927	+		PP_4918	0.26	+0.4
5,590,927	+		PP_4918	0.26	-1.4
5,590,928	-		PP_4918	0.26	-0.1
5,590,928	-		PP_4918	0.26	+1.4
5,590,990	+		PP_4918	0.40	-0.6
5,590,990	+		PP_4918	0.40	-0.9
5,590,990	+		PP_4918	0.40	-1.9
5,590,991	-		PP_4918	0.40	+0.1
5,591,063	+		PP_4918	0.56	+1.2
5,591,064	-		PP_4918	0.56	-0.8
5,591,064	-		PP_4918	0.56	+0.3
5,591,064	-		PP_4918	0.56	-0.8
5,591,064	-		PP_4918	0.56	-1.0
5,591,065	+		PP_4918	0.57	-0.5
5,591,066	-		PP_4918	0.57	-0.4
5,591,066	-		PP_4918	0.57	-0.6
5,591,188	+		PP_4918	0.84	+0.8
5,591,188	+				-0.6
5,591,188	+		PP_4918	0.84	+1.7
5,591,188	+		PP_4918	0.84	-1.1
5,591,189	-		PP_4918	0.84	+0.4
5,591,189	-		PP_4918	0.84	+0.5
5,591,189	-		PP_4918	0.84	-0.1
5,591,189	-		PP_4918	0.84	+0.2
5,591,189	-		PP_4918	0.84	+0.7
5,591,189	-		PP_4918	0.84	-1.1
5,591,189	-		PP_4918	0.84	-3.3
5,591,189	-		PP_4918	0.84	-0.2
5,591,263	+				+0.3
5,591,263	+				+1.3
5,591,264	-				+1.0
5,591,264	-				+1.8
5,591,264	-				-0.4
5,591,264	-				+0.4
5,591,271	-				+0.1
5,591,378	+		PP_4919	0.20	+1.4
5,591,379	-		PP_4919	0.20	-3.3
5,591,463	+		PP_4919	0.33	+0.9
5,591,463	+		PP_4919	0.33	+0.6
5,591,463	+		PP_4919	0.33	-0.1
5,591,464	-		PP_4919	0.34	+1.3
5,591,464	-		PP_4919	0.34	-1.9
5,591,464	-		PP_4919	0.34	+0.2
5,591,763	-		PP_4919	0.81	+0.6
5,591,763	-		PP_4919	0.81	-0.3
5,591,780	+		PP_4919	0.84	-0.2
5,591,780	+		PP_4919	0.84	+0.8
5,591,780	+		PP_4919	0.84	-1.4
5,591,781	-		PP_4919	0.84	-2.6
5,591,781	-		PP_4919	0.84	+0.2
5,591,796	+		PP_4919	0.86	+1.2
5,591,797	-		PP_4919	0.87	+1.4
5,591,891	+				+0.7
5,591,892	-				+0.6
5,591,909	+				+0.3
5,591,984	+				+1.0
5,591,985	-				+1.2
5,591,989	+				+0.9
5,591,989	+				+1.3
5,591,989	+				+1.8
5,591,990	-				+0.8
5,591,990	-				-0.6
5,592,133	+		PP_4920	0.10	+0.0
5,592,331	+				-0.6
5,592,332	-		PP_4920	0.37	-2.9
5,592,343	+		PP_4920	0.39	-0.1
5,592,343	+		PP_4920	0.39	+0.3
5,592,343	+		PP_4920	0.39	+0.4
5,592,344	-		PP_4920	0.39	+1.4
5,592,344	-		PP_4920	0.39	-0.1
5,592,367	-		PP_4920	0.42	-0.5
5,592,376	+		PP_4920	0.43	+0.2
5,592,377	-		PP_4920	0.43	-0.8
5,592,377	-		PP_4920	0.43	-1.3
5,592,436	+		PP_4920	0.51	-2.2
5,592,436	+		PP_4920	0.51	-1.2
5,592,437	-		PP_4920	0.51	-1.6
5,592,437	-		PP_4920	0.51	+1.3
5,592,437	-		PP_4920	0.51	-0.6
5,592,487	+		PP_4920	0.58	-0.9
5,592,487	+		PP_4920	0.58	+0.1
5,592,487	+		PP_4920	0.58	+0.6
5,592,671	-		PP_4920	0.82	+1.4
5,592,692	-		PP_4920	0.85	-1.8
5,592,692	-		PP_4920	0.85	+0.5
5,592,692	-		PP_4920	0.85	+0.2
5,592,692	-		PP_4920	0.85	+0.2
5,592,692	-		PP_4920	0.85	+0.9
5,592,692	-		PP_4920	0.85	-0.6
5,592,700	+		PP_4920	0.86	+0.6
5,592,701	-		PP_4920	0.86	+0.7
5,592,701	-		PP_4920	0.86	-1.5
5,592,701	-		PP_4920	0.86	+0.4
5,592,716	-		PP_4920	0.88	-1.7
5,592,768	-				-1.1
5,592,807	-				-0.9