Strain Fitness in Pseudomonas putida KT2440 around PP_4825

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,488,641	+		PP_4824	0.71	-0.5
5,488,641	+		PP_4824	0.71	-1.6
5,488,933	+		PP_4824	0.82	-0.5
5,488,933	+		PP_4824	0.82	-1.5
5,488,933	+				-2.0
5,488,933	+		PP_4824	0.82	-0.5
5,488,933	+				-0.3
5,488,933	+		PP_4824	0.82	+0.3
5,488,934	-		PP_4824	0.82	-1.6
5,489,172	-				+1.0
5,489,172	-				-0.5
5,489,172	-				-0.3
5,489,298	+				-2.5
5,489,298	+				-1.7
5,489,299	-				-1.3
5,489,299	-				-2.4
5,489,299	-				-1.9
5,489,434	+				-1.6
5,489,434	+				+0.9
5,489,434	+				-2.4
5,489,434	+				+1.1
5,489,435	-				-1.4
5,489,435	-				-1.4
5,489,498	+				+0.5
5,489,499	-				-0.9
5,489,544	-				-0.9
5,489,564	+				+2.5
5,489,565	-				+1.6
5,489,565	-				+1.1
5,489,684	+		PP_4825	0.28	-0.2
5,489,968	-		PP_4825	0.75	-0.0
5,489,981	+		PP_4825	0.77	-1.2
5,489,981	+		PP_4825	0.77	-0.3
5,489,981	+		PP_4825	0.77	+0.9
5,489,981	+		PP_4825	0.77	+1.5
5,489,981	+		PP_4825	0.77	-1.9
5,489,981	+		PP_4825	0.77	-0.2
5,489,981	+		PP_4825	0.77	-1.3
5,489,981	+		PP_4825	0.77	+0.6
5,489,981	+		PP_4825	0.77	+0.9
5,489,982	-		PP_4825	0.78	+1.0
5,489,982	-		PP_4825	0.78	+0.8
5,489,982	-		PP_4825	0.78	-0.4
5,489,985	+		PP_4825	0.78	-0.6
5,489,986	-		PP_4825	0.78	+1.1
5,490,051	+		PP_4825	0.89	+0.2
5,490,052	-		PP_4825	0.89	+0.8
5,490,052	-		PP_4825	0.89	+0.8
5,490,052	-		PP_4825	0.89	+0.8
5,490,085	+				-0.0
5,490,102	-				-0.4
5,490,113	+				+0.6
5,490,127	+				-0.7
5,490,127	+				-0.4
5,490,147	-				+2.4
5,490,255	+		PP_5714	0.20	+0.0
5,490,256	-		PP_5714	0.20	+1.8
5,490,256	-		PP_5714	0.20	-0.9
5,490,256	-		PP_5714	0.20	+1.8
5,490,472	+		PP_5714	0.53	-0.6
5,490,472	+		PP_5714	0.53	-0.6
5,490,605	-		PP_5714	0.73	-1.2
5,490,708	-		PP_5714	0.89	+0.5
5,490,847	-		PP_5715	0.10	-1.2
5,490,899	+				+2.0
5,490,900	-		PP_5715	0.18	+0.7
5,490,988	-		PP_5715	0.31	-0.3
5,490,988	-		PP_5715	0.31	+1.3
5,491,027	+		PP_5715	0.37	-1.9
5,491,028	-		PP_5715	0.37	-2.5
5,491,028	-		PP_5715	0.37	-0.9
5,491,065	+		PP_5715	0.42	+0.4
5,491,066	-		PP_5715	0.42	-1.2
5,491,096	+		PP_5715	0.47	-2.1
5,491,096	+		PP_5715	0.47	+0.8