Strain Fitness in Pseudomonas putida KT2440 around PP_4753

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,408,328	+		PP_4752	0.69	-1.1
5,408,328	+		PP_4752	0.69	-0.3
5,408,329	-		PP_4752	0.69	+0.1
5,408,329	-		PP_4752	0.69	-0.2
5,408,443	-		PP_4752	0.77	-0.6
5,408,443	-		PP_4752	0.77	+0.5
5,408,443	-		PP_4752	0.77	+1.5
5,408,479	+		PP_4752	0.80	+0.2
5,408,479	+		PP_4752	0.80	-0.6
5,408,536	-		PP_4752	0.85	+1.8
5,408,611	-				+0.6
5,408,611	-				+0.7
5,408,777	+				-1.7
5,408,782	-				+0.2
5,408,782	-				+0.3
5,408,782	-				-0.0
5,408,782	-				-0.6
5,408,792	+				+0.1
5,408,793	-				+0.3
5,408,793	-				+0.7
5,408,814	+				-0.4
5,408,814	+				-1.0
5,408,815	-				-0.4
5,408,815	-				+0.3
5,408,841	-				-0.4
5,408,870	+				+0.1
5,408,870	+				+1.9
5,408,870	+				-0.3
5,408,870	+				-0.3
5,408,871	-				+0.1
5,408,871	-				-1.2
5,408,871	-				+1.4
5,408,984	+				-0.5
5,408,985	-				-0.1
5,408,985	-				-1.8
5,409,030	-				+0.8
5,409,030	-				+1.1
5,409,104	+		PP_4753	0.13	-0.3
5,409,164	+		PP_4753	0.16	-1.2
5,409,165	-		PP_4753	0.16	-0.0
5,409,165	-		PP_4753	0.16	-1.5
5,409,165	-		PP_4753	0.16	-0.4
5,409,174	+		PP_4753	0.16	+0.5
5,409,174	+		PP_4753	0.16	-0.3
5,409,174	+		PP_4753	0.16	-1.1
5,409,197	-		PP_4753	0.18	-0.1
5,409,209	+		PP_4753	0.18	+1.1
5,409,209	+		PP_4753	0.18	-0.9
5,409,210	-		PP_4753	0.18	-1.6
5,409,210	-		PP_4753	0.18	+0.3
5,409,339	-		PP_4753	0.25	+0.4
5,409,740	-		PP_4753	0.44	-0.5
5,409,791	+		PP_4753	0.47	-1.6
5,409,809	+		PP_4753	0.48	-1.9
5,409,810	-		PP_4753	0.48	-0.3
5,409,827	+		PP_4753	0.49	-0.2
5,409,827	+		PP_4753	0.49	-0.4
5,409,827	+		PP_4753	0.49	-2.4
5,409,828	-		PP_4753	0.49	+1.0
5,410,368	-		PP_4753	0.75	-2.0
5,410,427	+		PP_4753	0.78	-1.5
5,410,646	+		PP_4753	0.89	-0.5
5,410,647	-		PP_4753	0.89	-0.7
5,410,721	-				+1.5
5,410,721	-				+0.0
5,410,749	-				+0.9
5,410,758	-				-0.0
5,410,913	+				+0.1
5,410,913	+				-1.0
5,410,913	+				-1.3
5,410,913	+				-0.4
5,410,913	+				+0.5
5,410,914	-				-1.0
5,411,059	-				-0.7
5,411,059	-				+1.1
5,411,069	-		PP_4754	0.11	-2.2
5,411,248	+		PP_4754	0.38	+0.2
5,411,249	-		PP_4754	0.39	-1.2
5,411,249	-		PP_4754	0.39	-1.2
5,411,457	+		PP_4754	0.71	-1.3
5,411,476	+		PP_4754	0.74	-1.4
5,411,494	+		PP_4754	0.76	-1.4
5,411,495	-		PP_4754	0.77	-0.1
5,411,539	+		PP_4754	0.83	-0.2
5,411,539	+		PP_4754	0.83	-2.2
5,411,539	+		PP_4754	0.83	-0.7
5,411,539	+		PP_4754	0.83	-0.6
5,411,539	+		PP_4754	0.83	-0.2
5,411,540	-		PP_4754	0.83	-2.6
5,411,540	-		PP_4754	0.83	+0.6
5,411,540	-		PP_4754	0.83	-1.5
5,411,540	-		PP_4754	0.83	-1.4
5,411,561	+		PP_4754	0.87	-0.3
5,411,562	-		PP_4754	0.87	-0.6
5,411,562	-		PP_4754	0.87	-0.6
5,411,562	-		PP_4754	0.87	-1.5
5,411,645	-				-0.4
5,411,680	+				-0.3
5,411,681	-				+0.0
5,411,784	+				-1.3
5,411,784	+				-0.5
5,411,784	+				-1.6
5,411,784	+				-3.4
5,411,785	-				-1.8
5,411,785	-				-2.5
5,411,785	-				-2.6
5,411,786	+				-2.0
5,411,786	+				-2.3
5,411,786	+				-2.3
5,411,786	+				-4.0
5,411,787	-				-2.2
5,411,787	-				-3.4
5,411,787	-				-2.6
5,411,787	-				-3.7
5,411,787	-				-2.0
5,411,822	+				-2.8
5,411,826	-				-1.8