Strain Fitness in Pseudomonas putida KT2440 around PP_4643

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,266,448	+				+0.0
5,266,448	+				+0.3
5,266,448	+				-0.4
5,266,449	-				-0.6
5,266,449	-				-0.8
5,266,449	-				-2.1
5,266,451	+				+0.5
5,266,451	+				+1.4
5,266,452	-				-2.0
5,266,452	-				+0.4
5,266,452	-				+1.5
5,266,470	-				+0.0
5,266,470	-				-0.2
5,266,470	-				+1.2
5,266,470	-				+0.9
5,266,556	-				+1.5
5,266,556	-				+0.5
5,266,596	+				-1.3
5,266,596	+				+1.1
5,266,596	+				-1.4
5,266,597	-				+2.0
5,266,597	-				+0.4
5,266,599	+				+1.4
5,266,599	+				-0.9
5,266,599	+				-0.4
5,266,599	+				+0.7
5,266,599	+				-0.3
5,266,599	+				+0.4
5,266,600	-				+0.5
5,266,600	-				-0.6
5,266,615	+				+0.4
5,266,695	+				+0.4
5,266,721	-				-2.2
5,266,742	-				-2.8
5,266,742	-				-0.7
5,266,742	-				-0.3
5,266,742	-				+1.5
5,266,745	+				-0.2
5,266,745	+				+0.4
5,266,745	+				-3.2
5,266,745	+				+0.1
5,266,745	+				-0.4
5,266,746	-				+0.1
5,266,748	-				-1.3
5,266,772	-				-1.3
5,267,051	-		PP_4642	0.74	-0.2
5,267,162	+				+1.2
5,267,162	+				+2.1
5,267,163	-				+1.0
5,267,167	-				-2.0
5,267,167	-				+0.4
5,267,170	+				-1.0
5,267,170	+				+1.4
5,267,170	+				-0.5
5,267,170	+				-0.8
5,267,171	-				+0.6
5,267,171	-				+0.0
5,267,174	-				+1.8
5,267,174	-				-0.5
5,267,214	+				-0.0
5,267,214	+				-2.8
5,267,214	+				+0.6
5,267,214	+				-0.1
5,267,214	+				-1.8
5,267,215	-				+0.5
5,267,215	-				+1.0
5,267,238	-				+0.5
5,267,249	+				-1.5
5,267,272	+				+0.3
5,267,273	-				-0.2
5,267,341	-				+0.8
5,267,366	+				+0.4
5,267,396	+				-1.3
5,267,420	+				+0.1
5,267,420	+				-1.8
5,267,420	+				-0.3
5,267,421	-				+0.3
5,267,421	-				+1.2
5,267,421	-				-0.7
5,267,421	-				+0.5
5,267,421	-				-0.9
5,267,421	-				-0.1
5,267,421	-				+0.8
5,267,421	-				+0.0
5,267,490	+				+0.9
5,267,490	+				-1.6
5,267,490	+				+1.1
5,267,491	-				+0.3
5,267,491	-				+0.3
5,267,517	+				-0.5
5,267,517	+				-0.7
5,267,517	+				-1.6
5,267,517	+				-2.5
5,267,517	+				-0.5
5,267,517	+				+0.2
5,267,517	+				-0.7
5,267,517	+				-0.9
5,267,517	+				+1.2
5,267,517	+				+1.1
5,267,518	-				-0.2
5,267,518	-				-2.6
5,267,518	-				-0.6
5,267,518	-				-0.6
5,267,518	-				-1.1
5,267,518	-				+0.7
5,267,518	-				-0.3
5,267,536	+				-0.2
5,267,916	-		PP_4643	0.33	-2.8
5,268,082	-		PP_4643	0.44	-0.1
5,268,180	-		PP_4643	0.50	+0.1
5,268,180	-		PP_4643	0.50	+0.1
5,268,390	+		PP_4643	0.64	-1.1
5,268,390	+		PP_4643	0.64	-1.1
5,268,391	-		PP_4643	0.64	+0.3
5,268,424	+		PP_4643	0.66	-1.0
5,268,425	-		PP_4643	0.67	-1.7
5,268,425	-		PP_4643	0.67	-0.7
5,268,425	-		PP_4643	0.67	-1.2
5,268,494	+		PP_4643	0.71	-0.7
5,268,552	+		PP_4643	0.75	+0.7
5,268,553	-		PP_4643	0.75	+0.2
5,268,553	-		PP_4643	0.75	-1.4
5,268,553	-		PP_4643	0.75	-1.2
5,268,630	+		PP_4643	0.80	+0.9
5,268,630	+		PP_4643	0.80	-1.1
5,268,630	+		PP_4643	0.80	+0.5
5,268,630	+		PP_4643	0.80	-0.3
5,268,630	+		PP_4643	0.80	+0.2
5,268,631	-		PP_4643	0.80	+0.8
5,268,631	-		PP_4643	0.80	-1.2
5,268,631	-		PP_4643	0.80	+0.3
5,268,631	-		PP_4643	0.80	+1.0
5,268,790	-				-2.0
5,268,823	-				-1.0
5,269,130	+		PP_4644	0.12	+1.2
5,269,478	-		PP_4644	0.37	-1.4
5,269,508	+		PP_4644	0.39	+0.8
5,269,509	-		PP_4644	0.39	+0.9
5,269,623	+		PP_4644	0.48	-0.7
5,269,624	-		PP_4644	0.48	+1.4
5,269,728	+		PP_4644	0.55	-1.0
5,269,728	+		PP_4644	0.55	-0.6
5,269,728	+		PP_4644	0.55	-1.8
5,269,728	+		PP_4644	0.55	-1.3